View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0779_low_8 (Length: 449)

Name: NF0779_low_8
Description: NF0779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0779_low_8
NF0779_low_8
[»] chr5 (1 HSPs)
chr5 (29-449)||(24506241-24506642)
[»] chr7 (2 HSPs)
chr7 (29-191)||(35661780-35661940)
chr7 (292-328)||(35661667-35661703)
[»] chr3 (3 HSPs)
chr3 (76-182)||(3814042-3814148)
chr3 (314-441)||(20597190-20597317)
chr3 (341-449)||(3814189-3814297)
[»] chr8 (1 HSPs)
chr8 (66-182)||(23705508-23705624)
[»] chr6 (2 HSPs)
chr6 (314-441)||(8698189-8698316)
chr6 (305-447)||(19835867-19836009)
[»] chr4 (2 HSPs)
chr4 (347-449)||(20623175-20623277)
chr4 (112-149)||(38696734-38696771)
[»] chr2 (2 HSPs)
chr2 (128-180)||(21543516-21543568)
chr2 (307-355)||(42732692-42732740)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 29 - 449
Target Start/End: Complemental strand, 24506642 - 24506241
Alignment:
Q  29 atttttgtcctgtttgcatcccattttttcatcaaatatacacctttatatctacacacattgtgacaattgacttttgtctaggaatgataatggttga 128  Q
    |||||||||||||||||||||||||||| |||||| ||  |||| |||||||| |||||||||| ||||||||||||| ||||||||| | |||||||||    
T  24506642 atttttgtcctgtttgcatcccatttttccatcaagta--cacccttatatcttcacacattgtcacaattgacttttctctaggaataacaatggttga 24506545  T
Q  129 gttgaatgcttctgacatattgtttactagagtgtcacattttgaattacctgaaaataatcataaaccagttttaaacatacttaaaaaattgatnnnn 228  Q
    |||||||||||||||||||||||| ||||||| |||||| ||||| ||||||||||||||||||||| |||||||||||||| ||| ||||             
T  24506544 gttgaatgcttctgacatattgttgactagagcgtcacactttgagttacctgaaaataatcataaatcagttttaaacatatttacaaaa--------- 24506454  T
Q  229 nnnnnnncagtattcattccatccagaaagttattaaaaaatgttacacataaagccaatatacatacctgaaaagttggacttactccaatgcttagca 328  Q
           || |||| || ||||||| ||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24506453 -------caatatttat-ccatccataaagttattaaaaaatgctagacataaagccaatatacatacctgaaaacttggacttactccaatgcttagca 24506362  T
Q  329 tgaatcaattttaggtaatcatatgcaccttgacttatgtcctttatctctttcattgcatcatcaaatgcattttgaaaagttgctttagctgccttcc 428  Q
     |||||||||| |||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| | |||||||||||||    
T  24506361 ggaatcaatttgaggtaatcatatgcaggttgacatatgtcctttatctctttcattgcatcatcaaatgcattttcataagttaccttagctgccttcc 24506262  T
Q  429 acattaactccttcaatttct 449  Q
    ||||||| || ||||||||||    
T  24506261 acattaattctttcaatttct 24506241  T

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Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 35661940 - 35661780
Alignment:
Q  29 atttttgtcctgtttgcatcccattttttcatcaaatatacacctttatatctacacacattgtgacaattgacttttgtctaggaatgataatggttga 128  Q
    ||||| ||||| ||||||||||||||||  ||||||||  |||| | |||||| |||||||||| ||||||| ||||||||||||||||| |||||||||    
T  35661940 attttggtcctatttgcatcccatttttctatcaaata--caccctgatatcttcacacattgtcacaattggcttttgtctaggaatgacaatggttga 35661843  T
Q  129 gttgaatgcttctgacatattgtttactagagtgtcacattttgaattacctgaaaataatca 191  Q
    |||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||    
T  35661842 gttgaatgcttctgacatattgttcactagagtgtcacaatgtgaattacctgaaaataatca 35661780  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 328
Target Start/End: Complemental strand, 35661703 - 35661667
Alignment:
Q  292 catacctgaaaagttggacttactccaatgcttagca 328  Q
    |||||||||||| ||||||||||||||||||||||||    
T  35661703 catacctgaaaacttggacttactccaatgcttagca 35661667  T

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Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 76 - 182
Target Start/End: Original strand, 3814042 - 3814148
Alignment:
Q  76 atatctacacacattgtgacaattgacttttgtctaggaatgataatggttgagttgaatgcttctgacatattgtttactagagtgtcacattttgaat 175  Q
    |||||| ||||||| || ||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||    
T  3814042 atatcttcacacatggtaacaattggcttttgtctaggaatgacaatggttgagttgaaagcttctgacatattgttgactagagtatcacactttgaat 3814141  T
Q  176 tacctga 182  Q
     ||||||    
T  3814142 cacctga 3814148  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 314 - 441
Target Start/End: Complemental strand, 20597317 - 20597190
Alignment:
Q  314 ctccaatgcttagcatgaatcaattttaggtaatcatatgcaccttgacttatgtcctttatctctttcattgcatcatcaaatgcattttgaaaagttg 413  Q
    ||||||||||| ||||||||   ||| || || |||||||| ||||  ||||| ||||| ||||||||||| ||||||   |||||||||| | ||||||    
T  20597317 ctccaatgcttggcatgaatgtttttgagatactcatatgctccttcccttatatccttgatctctttcatggcatcaatgaatgcattttcataagttg 20597218  T
Q  414 ctttagctgccttccacattaactcctt 441  Q
    |||| |||||| ||||||| ||||||||    
T  20597217 cttttgctgccctccacatcaactcctt 20597190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 449
Target Start/End: Original strand, 3814189 - 3814297
Alignment:
Q  341 aggtaatcatatgcaccttgacttatgtcctttatctctttcattgcatcatcaaatgcattttgaaaagttgctttagctgccttccacattaactcct 440  Q
    |||||||||||||||   | ||| || ||||| |||||||||||| |||||   |||||||| | | |||||| ||| |||||| |||||||||| ||||    
T  3814189 aggtaatcatatgcaggctcactaatctccttgatctctttcattacatcaaggaatgcattctcataagttgattttgctgccctccacattaattcct 3814288  T
Q  441 tcaatttct 449  Q
    |||| ||||    
T  3814289 tcaacttct 3814297  T

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Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 66 - 182
Target Start/End: Original strand, 23705508 - 23705624
Alignment:
Q  66 atacacctttatatctacacacattgtgacaattgacttttgtctaggaatgataatggttgagttgaatgcttctgacatattgtttactagagtgtca 165  Q
    ||||||||  |||||| ||||||| || ||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| |||    
T  23705508 atacacctggatatcttcacacatagtaacaattggcttttgtctaggaatgacaatggttgagttgaaagcttctgacatattgttgactagagtatca 23705607  T
Q  166 cattttgaattacctga 182  Q
    || | |||||| |||||    
T  23705608 cactgtgaattccctga 23705624  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 441
Target Start/End: Complemental strand, 8698316 - 8698189
Alignment:
Q  314 ctccaatgcttagcatgaatcaattttaggtaatcatatgcaccttgacttatgtcctttatctctttcattgcatcatcaaatgcattttgaaaagttg 413  Q
    ||||||||||| ||| ||||   ||| || || |||||||| |||| |||||| ||||| || |||||||| |||||||  |||||||||| | | ||||    
T  8698316 ctccaatgcttggcaggaatatttttgagatactcatatgctccttcacttatatccttgatatctttcatggcatcattgaatgcattttcatatgttg 8698217  T
Q  414 ctttagctgccttccacattaactcctt 441  Q
    |||| |||||| ||||||| ||||||||    
T  8698216 cttttgctgccctccacatcaactcctt 8698189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 305 - 447
Target Start/End: Complemental strand, 19836009 - 19835867
Alignment:
Q  305 ttggacttactccaatgcttagcatgaatcaattttaggtaatcatatgcaccttgacttatgtcctttatctctttcattgcatcatcaaatgcatttt 404  Q
    ||||| |||||||||||||||||| | ||||| || || || ||||| ||||| |||||||| |   | ||||| |||||| |||||||||| ||||||     
T  19836009 ttggagttactccaatgcttagcagggatcaacttcagatattcataagcaccctgacttatctttctgatctcattcattacatcatcaaaggcatttg 19835910  T
Q  405 gaaaagttgctttagctgccttccacattaactccttcaattt 447  Q
       ||||||| ||||| ||  ||||||| ||||||||||||||    
T  19835909 agtaagttgccttagcagctctccacatcaactccttcaattt 19835867  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 449
Target Start/End: Complemental strand, 20623277 - 20623175
Alignment:
Q  347 tcatatgcaccttgacttatgtcctttatctctttcattgcatcatcaaatgcattttgaaaagttgctttagctgccttccacattaactccttcaatt 446  Q
    ||||| || |||| |||||| || |||||||||  |||||||||||  |||||||| | | || | ||||| |||||||||||||| || |||||||| |    
T  20623277 tcataagctccttcacttatctcttttatctctgccattgcatcattgaatgcattatcataactggcttttgctgccttccacatcaattccttcaact 20623178  T
Q  447 tct 449  Q
    |||    
T  20623177 tct 20623175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 38696771 - 38696734
Alignment:
Q  112 ggaatgataatggttgagttgaatgcttctgacatatt 149  Q
    |||||||| || ||||||||||||||||||||||||||    
T  38696771 ggaatgatgatagttgagttgaatgcttctgacatatt 38696734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 21543516 - 21543568
Alignment:
Q  128 agttgaatgcttctgacatattgtttactagagtgtcacattttgaattacct 180  Q
    |||||||||||||||| || || |||||||| |||||||| ||||||| ||||    
T  21543516 agttgaatgcttctgatatgttatttactagtgtgtcacagtttgaatcacct 21543568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 42732692 - 42732740
Alignment:
Q  307 ggacttactccaatgcttagcatgaatcaattttaggtaatcatatgca 355  Q
    |||||||||||||||||||||| | ||||||||||| || ||| |||||    
T  42732692 ggacttactccaatgcttagcagggatcaattttagatattcaaatgca 42732740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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