View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0779_low_9 (Length: 405)
Name: NF0779_low_9
Description: NF0779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0779_low_9 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 9 - 405
Target Start/End: Original strand, 8375873 - 8376269
Alignment:
| Q |
9 |
agcagagagaagatagggaagcagattcaaggggattggcagatttccgtcgtcacaatccacctcaattccatggagaattagacccagagaaggctga |
108 |
Q |
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| T |
8375873 |
agcagagagaagatagggaagcagattcaaggggattggcagatttccgtcgtcacaatccacctcaattccatggagaattagacccagagaaggctga |
8375972 |
T |
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| Q |
109 |
tttgtggctacaagaagtggagaagattttgaaagtgattaactgtcctgaagaatcaaaggtgaaatatgccacatatttgttgcttggtgatgcagag |
208 |
Q |
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| T |
8375973 |
tttgtggctacaagaagtggagaagattttgaaagtgattaactgtcctgaagaatcaaaggtgaaatatgccacacatttgttgcttggtgatgcagag |
8376072 |
T |
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| Q |
209 |
tattggtggaaaaatgctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggtttttcagaccaagttcttggaaagatattttcctcaga |
308 |
Q |
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| T |
8376073 |
tattggtggaaaaatgctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggtttttcagaccaagttcttggaaagatattttcctcaga |
8376172 |
T |
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| Q |
309 |
gtgcaagaactaaattgggtgatgattttctaaagttacaacagggcaacatgacggtaggagcatatgcagcaaggtttgagacattgtccaggta |
405 |
Q |
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| T |
8376173 |
gtgcaagaactaaattgggtgatgattttctaaagttacaacagggcaacatgacggtaggagcatatgcagcaaggtttgagacactgtccaggta |
8376269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 9 - 405
Target Start/End: Complemental strand, 7095929 - 7095533
Alignment:
| Q |
9 |
agcagagagaagatagggaagcagattcaaggggattggcagatttccgtcgtcacaatccacctcaattccatggagaattagacccagagaaggctga |
108 |
Q |
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| T |
7095929 |
agcagagagaagatagggaagcagattcaaggggattggcagatttccgtcgtcacaatccacctcaattccatggagaattagacccagagagggctga |
7095830 |
T |
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| Q |
109 |
tttgtggctacaagaagtggagaagattttgaaagtgattaactgtcctgaagaatcaaaggtgaaatatgccacatatttgttgcttggtgatgcagag |
208 |
Q |
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| T |
7095829 |
tttgtggctacaagaagtggagaagattttgaaagtgattaactgtcctgaagaatcaaaggtgaaatatgccacatatttgttgcttggtgatgcagat |
7095730 |
T |
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| Q |
209 |
tattggtggaaaaatgctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggtttttcagaccaagttcttggaaagatattttcctcaga |
308 |
Q |
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| T |
7095729 |
tattggtggaaaaatgctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggtttttcagaccaagttcttggaaagatattttcctcaga |
7095630 |
T |
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| Q |
309 |
gtgcaagaactaaattgggtgatgattttctaaagttacaacagggcaacatgacggtaggagcatatgcagcaaggtttgagacattgtccaggta |
405 |
Q |
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| T |
7095629 |
gtgcaagaactaaattgggtgatgattttctgaagttacaacagggcaacatgacggtaggagcatatgcagcaaggtttgagacattgtccaggta |
7095533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 393
Target Start/End: Original strand, 15420472 - 15420854
Alignment:
| Q |
11 |
cagagagaagatagggaagcagattcaaggggattggcagatttccgtcgtcacaatccacctcaattccatggagaattagacccagagaaggctgatt |
110 |
Q |
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| T |
15420472 |
cagagagaagatagggcagcagattcaaggggcttggctgattttcgtcgtcacaatccaccccaattccacggggaagtggacccagagaaggctgatt |
15420571 |
T |
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| Q |
111 |
tgtggctacaagaagtggagaagattttgaaagtgattaactgtcctgaagaatcaaaggtgaaatatgccacatatttgttgcttggtgatgcagagta |
210 |
Q |
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| T |
15420572 |
tgtggctacaagaagttgaaaagattttgaatgtgattaactgtcctgaagattctaaggtgaaatatgccacttatctgttgcttggtgatgcagagta |
15420671 |
T |
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| Q |
211 |
ttggtggaaaaatgctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggtttttcagaccaagttcttggaaagatattttcctcagagt |
310 |
Q |
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||||||||||||||| |||| ||||||||| ||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| ||| ||||||||| |
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| T |
15420672 |
ttggtggaaaaatgccaaaagtatgttagagaatgctcaagaggaaatcacttgggaggtttttcaagccaagttcttggaaagatttttccctcagagt |
15420771 |
T |
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| Q |
311 |
gcaagaactaaattgggtgatgattttctaaagttacaacagggcaacatgacggtaggagcatatgcagcaaggtttgagac |
393 |
Q |
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| T |
15420772 |
gcaagaactaaattgggtgatgattttctgaagttacgacagggcaacatgacggtaggagcatatgcagcaaggtttgagac |
15420854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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