View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0780_high_15 (Length: 273)
Name: NF0780_high_15
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 3 - 267
Target Start/End: Original strand, 17454365 - 17454616
Alignment:
| Q |
3 |
atcatgattgattagacatttccatgattattttttaataaagtcgtgcgactaaaaaatgatatctaatccaagtacttatttaagaatgattgtaatt |
102 |
Q |
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| T |
17454365 |
atcatgattgattagacgcttccataattattttttaataaagtcgtgcgactaaaaaatgatat-------------ttatttaagaatgattgtaatt |
17454451 |
T |
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| Q |
103 |
tatactatatgtaactattgcaaattacctgtccatatagagttgatccaactccacctgaatgttgatgagcaacagcatagatcacatagccaccggt |
202 |
Q |
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| T |
17454452 |
tatactatatgtaactattgcaaattacctgtccatataaagttgatccaactccccctgaatgttgatgagcaacagcatagatcacatagccaccagt |
17454551 |
T |
|
| Q |
203 |
ttgcagtgggagacttgtcctcctcacatgaatacaaccatctccctcctcatggtctgtgctgc |
267 |
Q |
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| T |
17454552 |
ttgcagtgggagacttgtcctcttcacatgaacacaaccatttccctcctcatggtctgtgctgc |
17454616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 3 - 267
Target Start/End: Original strand, 17433275 - 17433537
Alignment:
| Q |
3 |
atcatgattgattagacatttccatgattattttttaataaagtcgtgcgactaaaaaa-tgatatctaatccaagtacttatttaagaatgattgt-aa |
100 |
Q |
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| T |
17433275 |
atcatgattgattagaccctttcatacttactttttaataaagttgtgccaataaaaaaatgatatctaatccaggta----tttaagaatgatttttaa |
17433370 |
T |
|
| Q |
101 |
tttatactatatgtaactattgcaaattacctgtccatatagagttgatccaactccacctgaatgttgatgagcaacagcatagatcacatagccaccg |
200 |
Q |
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| T |
17433371 |
tttatactatatgtaactattgcaaattacctgtccgtatagagttgatccagttccacctgaatgttgatgagcaacagcatagatcacatatccacca |
17433470 |
T |
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| Q |
201 |
gtttgcagtgggagacttgtcctcctcacatgaatacaaccatctccctcctcatggtctgtgctgc |
267 |
Q |
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| T |
17433471 |
gtttgtagtgggagacttgtcctcttcacatgaacacaaccattttcctcctcatggtctctgctgc |
17433537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 112 - 243
Target Start/End: Original strand, 38213986 - 38214117
Alignment:
| Q |
112 |
tgtaactattgcaaattacctgtccatatagagttgatccaactccacctgaatgttgatgagcaacagcatagatcacatagccaccggtttgcagtgg |
211 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||| ||||||||||| ||||| ||||| |
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| T |
38213986 |
tgtaagtattgcaaattacctgtccatatagagttgatccaattccgcctgaatgctgatgagcaacagcatagacaacatagccaccagtttgtagtgg |
38214085 |
T |
|
| Q |
212 |
gagacttgtcctcctcacatgaatacaaccat |
243 |
Q |
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| T |
38214086 |
gagacttgtcctcatcacatgaacacaaccat |
38214117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 116 - 252
Target Start/End: Original strand, 38253236 - 38253372
Alignment:
| Q |
116 |
actattgcaaattacctgtccatatagagttgatccaactccacctgaatgttgatgagcaacagcatagatcacatagccaccggtttgcagtgggaga |
215 |
Q |
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|||||||||||||||||||||| |||| |||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
38253236 |
actattgcaaattacctgtccaaatagggttgatccaattccacctgaatgctgatgagcaacaccatagatcacatagccaccggtttgtagtgggaga |
38253335 |
T |
|
| Q |
216 |
cttgtcctcctcacatgaatacaaccatctccctcct |
252 |
Q |
| |
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|||||||| | ||||||| ||| |||| |||||||| |
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| T |
38253336 |
cttgtcctttttacatgaacacacccatttccctcct |
38253372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 119 - 264
Target Start/End: Original strand, 38226372 - 38226517
Alignment:
| Q |
119 |
attgcaaattacctgtccatatagagttgatccaactccacctgaatgttgatgagcaacagcatagatcacatagccaccggtttgcagtgggagactt |
218 |
Q |
| |
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|||| |||||||||| || |||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||| ||||| |||||||||||| |
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| T |
38226372 |
attgtaaattacctgcccgtatagagttgatccaattccacctgaatgctgatgagcaacaccatagatcacatagccaccagtttgtagtgggagactt |
38226471 |
T |
|
| Q |
219 |
gtcctcctcacatgaatacaaccatctccctcctcatggtctgtgc |
264 |
Q |
| |
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|||||| |||||| || |||||||| || || | ||||||||||| |
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| T |
38226472 |
gtcctcttcacatcaacacaaccatttctttctttatggtctgtgc |
38226517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 114 - 267
Target Start/End: Original strand, 38242881 - 38243034
Alignment:
| Q |
114 |
taactattgcaaattacctgtccatatagagttgatccaactccacctgaatgttgatgagcaacagcatagatcacatagccaccggtttgcagtggga |
213 |
Q |
| |
|
||||||||| ||||||||||||||||||| || ||||||| |||||||||||| ||||| |||||| ||||||||||||| ||||| ||||| | ||||| |
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| T |
38242881 |
taactattggaaattacctgtccatatagggtggatccaattccacctgaatgctgatgtgcaacaccatagatcacatatccaccagtttgaaatggga |
38242980 |
T |
|
| Q |
214 |
gacttgtcctcctcacatgaatacaaccatctccctcctcatggtctgtgctgc |
267 |
Q |
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||||||||||| ||||||||| ||| |||| | ||||| |||||||||||||| |
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| T |
38242981 |
gacttgtcctcttcacatgaacacacccattttcctccctatggtctgtgctgc |
38243034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 127 - 267
Target Start/End: Original strand, 38237919 - 38238059
Alignment:
| Q |
127 |
ttacctgtccatatagagttgatccaactccacctgaatgttgatgagcaacagcatagatcacatagccaccggtttgcagtgggagacttgtcctcct |
226 |
Q |
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|
||||||||||||||||||||||||||| ||| |||||||||||||||||| || ||||||||| ||||||||| ||||| | |||||||||||||||| | |
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| T |
38237919 |
ttacctgtccatatagagttgatccaattccgcctgaatgttgatgagcagcaccatagatcatatagccaccagtttgaaatgggagacttgtcctctt |
38238018 |
T |
|
| Q |
227 |
cacatgaatacaaccatctccctcctcatggtctgtgctgc |
267 |
Q |
| |
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|||||||| ||| || |||||||| |||||||||||||| |
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| T |
38238019 |
cacatgaacacaggaatttccctccttatggtctgtgctgc |
38238059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 110 - 263
Target Start/End: Original strand, 38220022 - 38220175
Alignment:
| Q |
110 |
tatgtaactattgcaaattacctgtccatatagagttgatccaactccacctgaatgttgatgagcaacagcatagatcacatagccaccggtttgcagt |
209 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| || ||||| | |||||| ||||||||||| |||||| ||||||||||||| ||||| ||||| | | |
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| T |
38220022 |
tatgtaactattggaaattacctgtccatatagggtggatccgattccacccgaatgttgatgtgcaacaccatagatcacataaccaccagtttgaaat |
38220121 |
T |
|
| Q |
210 |
gggagacttgtcctcctcacatgaatacaaccatctccctcctcatggtctgtg |
263 |
Q |
| |
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||||||||| ||||| ||||||||| |||||||| ||| |||| ||||| |||| |
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|
| T |
38220122 |
gggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtg |
38220175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 38248174 - 38248234
Alignment:
| Q |
207 |
agtgggagacttgtcctcctcacatgaatacaaccatctccctcctcatggtctgtgctgc |
267 |
Q |
| |
|
||||||||||||||||| ||||||||| ||| |||| |||||||| || |||||||||| |
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|
| T |
38248174 |
agtgggagacttgtccttttcacatgaacacacccatttccctcctattgatctgtgctgc |
38248234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 11473615 - 11473531
Alignment:
| Q |
129 |
acctgtccatatagagttgatccaactccacctgaatgttgatgagcaacagcatagatcacatagccaccggtttgcagtggga |
213 |
Q |
| |
|
|||| |||||||||||||||||||| | ||||||||||||||||| |||| ||||||| | ||| ||||| |||||| ||||| |
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|
| T |
11473615 |
acctttccatatagagttgatccaattgcacctgaatgttgatgaccaactccatagatgagataaccaccattttgcattggga |
11473531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 11485886 - 11485802
Alignment:
| Q |
129 |
acctgtccatatagagttgatccaactccacctgaatgttgatgagcaacagcatagatcacatagccaccggtttgcagtggga |
213 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||| |||||| |||| ||||||| ||||| ||||| |||||| ||||| |
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|
| T |
11485886 |
acctttccatatagagttgatccaattgcacctgaatgctgatgaccaactccatagatgacataaccaccattttgcattggga |
11485802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 11479792 - 11479708
Alignment:
| Q |
129 |
acctgtccatatagagttgatccaactccacctgaatgttgatgagcaacagcatagatcacatagccaccggtttgcagtggga |
213 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||| ||||| |||| |||| || ||||| || ||| |||||| ||||| |
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| T |
11479792 |
acctgtccatatagagttgatccaattgcacctgaatgctgatggccaactccatatatgacataaccgccgttttgcattggga |
11479708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 21547405 - 21547341
Alignment:
| Q |
129 |
acctgtccatatagagttgatccaactccacctgaatgttgatgagcaacagcatagatcacata |
193 |
Q |
| |
|
||||||||||||||||||||||||| | |||||| ||| ||||| |||| ||||||| ||||| |
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|
| T |
21547405 |
acctgtccatatagagttgatccaattgcacctgtgtgtagatgaccaactccatagatgacata |
21547341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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