View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0780_high_20 (Length: 248)
Name: NF0780_high_20
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_high_20 |
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| [»] scaffold0070 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 95 - 224
Target Start/End: Original strand, 7247255 - 7247384
Alignment:
| Q |
95 |
ctgcacctgcctttgttgttgctgctgctgcccttgtctctgacatcttttacagaaattcataaactaatgtacaaagaaaaaattaaattcaaatgca |
194 |
Q |
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| T |
7247255 |
ctgcacctgcctttgttgttgctgctgctgcccttgtctctgacatcttttacacaaattcataaactaatgtacaaagaaaaaattaaatgcaaatgca |
7247354 |
T |
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| Q |
195 |
tgttagtccatgcacctttggttttgctgt |
224 |
Q |
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| T |
7247355 |
tgttagtccatgcacctttggttttgctgt |
7247384 |
T |
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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 215
Target Start/End: Complemental strand, 25321474 - 25321379
Alignment:
| Q |
120 |
tgctgcccttgtctctgacatcttttacagaaattcataaactaatgtacaaagaaaaaattaaattcaaatgcatgttagtccatgcacctttgg |
215 |
Q |
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| T |
25321474 |
tgctgcctttgtctctaacatcttttacaaaaattcactaataaatgtacaaataaaaactaaatttcaaatgcatgttggtccattcacctttgg |
25321379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 30249919 - 30249977
Alignment:
| Q |
21 |
actcccgtcatgatccaatagagtatagttagacaaagacattagacaaattttccaca |
79 |
Q |
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| T |
30249919 |
actcccgtcatgatccaatagagtatagttagacaaagacattagacaaattttccaca |
30249977 |
T |
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Target: scaffold0070 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 215
Target Start/End: Original strand, 18409 - 18505
Alignment:
| Q |
120 |
tgctgcccttgtctctgacatctttt-acagaaattcataaactaatgtacaaagaaaaaattaaattcaaatgcatgttagtccatgcacctttgg |
215 |
Q |
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| T |
18409 |
tgctgcctttgtcactgacatctttttacaaaaattcacaaggaaatgtacaaagaaaaactaaatttcaaatgcatgttggtccattcacctttgg |
18505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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