View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0780_high_8 (Length: 323)
Name: NF0780_high_8
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 294
Target Start/End: Complemental strand, 4192860 - 4192582
Alignment:
| Q |
16 |
atgcccctaaacacagtttccaaaatagttattttgtattggtggttctaaccttgatctgcaatctatggggaaagcaaaagaaaacttatctttctcc |
115 |
Q |
| |
|
||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4192860 |
atgcccccagacacagtttccaaaatagttatttggtattggtggttctaaccttgatctgcaatctatggggaaagcaaaagaaaacttatctttctcc |
4192761 |
T |
|
| Q |
116 |
ttagcagctccatgaatcgcttttgccaaacaaacaagcgaatatgcacaagtgagaacaaaagctgataaagattgtggctttaaatttgattcatttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4192760 |
ttagcagctccatgaatcgcttttgccaaacaaacaagcgaatatgcacaagtgagaacaaaagctgataaagattgtggctttaaatttgattcatttt |
4192661 |
T |
|
| Q |
216 |
tatcaacaacttccaattttgataataccatttgcgttatcttgatcaaatcttcaagcgtgagattgaacgtggcacg |
294 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4192660 |
tatcaacaacttccaattttgatgataccatttgctttatcttgatcaaatcttcaagcgtgagattgaacgtggcacg |
4192582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 4189737 - 4189462
Alignment:
| Q |
19 |
cccctaaacacagtttccaaaatagttattttgtattggtggttctaaccttgatctgcaatctatggggaaagcaaaagaaaacttatctttctcctta |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||| || |||||||||||||||||| ||||||||| || |
|
|
| T |
4189737 |
cccccaaacacagtttccaaaatagttacttggtattggtggttctaaccttgctctgcaatctacggtgaaagcaaaagaaaacttttctttctccata |
4189638 |
T |
|
| Q |
119 |
gcagctccatgaatcgcttttgccaaacaaacaagcgaatatgcacaagtgagaacaaaagctgataaagattgtggctttaaatttgattcatttttat |
218 |
Q |
| |
|
| |||| |||||||||||||| ||||||| || ||||| ||||||||||||||||||| |||||||| |||||||||| ||| |||||||||| ||| |
|
|
| T |
4189637 |
tctgctcggtgaatcgcttttgcataacaaacgagtgaataagcacaagtgagaacaaaagatgataaagtttgtggctttgaatatgattcatttgtat |
4189538 |
T |
|
| Q |
219 |
caacaacttccaattttgataataccatttgcgttatcttgatcaaatcttcaagcgtgagattgaacgtggcacg |
294 |
Q |
| |
|
|| || |||| |||||||||| ||||||||| |||||||| ||||||||||| ||||||||||||| |||||||| |
|
|
| T |
4189537 |
cataaaattcccattttgataacaccatttgctttatcttgttcaaatcttcacgcgtgagattgaatgtggcacg |
4189462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 29 - 285
Target Start/End: Complemental strand, 4234359 - 4234103
Alignment:
| Q |
29 |
cagtttccaaaatagttattttgtattggtggttctaaccttgatctgcaatctatggggaaagcaaaagaaaacttatctttctccttagcagctccat |
128 |
Q |
| |
|
||||||||||||||||||||| ||| |||||| |||||||||| ||||||||||| || ||| ||||| |||||| ||||||||||| || |||||| |
|
|
| T |
4234359 |
cagtttccaaaatagttatttggtagtggtggctctaaccttgctctgcaatctacggtgaatgcaaacccaaacttctctttctccttttcaactccat |
4234260 |
T |
|
| Q |
129 |
gaatcgcttttgccaaacaaacaagcgaatatgcacaagtgagaacaaaagctgataaagattgtggctttaaatttgattcatttttatcaacaacttc |
228 |
Q |
| |
|
|||| ||||||||||||||||||||||| || ||||||||||||||||||| |||||||| | ||||||| || || ||||||| | || | | ||| |
|
|
| T |
4234259 |
gaattgcttttgccaaacaaacaagcgagtaagcacaagtgagaacaaaagatgataaagttggtggcttagaagttaattcattcgtgtccaataattc |
4234160 |
T |
|
| Q |
229 |
caattttgataataccatttgcgttatcttgatcaaatcttcaagcgtgagattgaa |
285 |
Q |
| |
|
| |||||||||||||||||||| ||||||| ||||||||||| | ||||| ||||| |
|
|
| T |
4234159 |
ccattttgataataccatttgctttatcttattcaaatcttcacgtgtgagcttgaa |
4234103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 4251374 - 4251199
Alignment:
| Q |
24 |
aaacacagtttccaaaatagttattttgtattggtggttctaaccttgatctgcaatctatggggaaagcaaaagaaaacttatctttctccttagcagc |
123 |
Q |
| |
|
||||||||||||||| |||||||||| |||||| |||||||||||||| ||||||||||| | ||| ||||||||||||| ||||| || ||| ||| |
|
|
| T |
4251374 |
aaacacagtttccaagatagttatttggtattgttggttctaaccttgctctgcaatctacgctgaacacaaaagaaaacttctctttgtcattatgagc |
4251275 |
T |
|
| Q |
124 |
tccatgaatcgcttttgccaaacaaacaagcgaatatgcacaagtgagaacaaaagctgataaagattgtggcttt |
199 |
Q |
| |
|
||||||||||||||||| | |||||| |||||||| |||||||||| ||||| | ||||| || |||||||||| |
|
|
| T |
4251274 |
cccatgaatcgcttttgcaacacaaacgagcgaataagcacaagtgatgacaaatgatgatagagtttgtggcttt |
4251199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 188
Target Start/End: Complemental strand, 4210698 - 4210536
Alignment:
| Q |
26 |
acacagtttccaaaatagttattttgtattggtggttctaaccttgatctgcaatctatggggaaagcaaaagaaaacttatctttctccttagcagctc |
125 |
Q |
| |
|
||||| |||||||||||||||||| ||| || ||| |||||||||| ||||||||||| || ||| |||| | |||||| ||||||||| | | || |
|
|
| T |
4210698 |
acacaatttccaaaatagttatttggtagtgatggctctaaccttgctctgcaatctacggtgaatccaaatgcaaacttctctttctccattttaattc |
4210599 |
T |
|
| Q |
126 |
catgaatcgcttttgccaaacaaacaagcgaatatgcacaagtgagaacaaaagctgataaag |
188 |
Q |
| |
|
||||||| |||||||||||||||||||| | ||| | ||| ||||||||||| | |||||||| |
|
|
| T |
4210598 |
catgaattgcttttgccaaacaaacaagggcataagaacatgtgagaacaaacgatgataaag |
4210536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 294
Target Start/End: Complemental strand, 4196419 - 4196351
Alignment:
| Q |
226 |
ttccaattttgataataccatttgcgttatcttgatcaaatcttcaagcgtgagattgaacgtggcacg |
294 |
Q |
| |
|
|||| |||||| ||| ||||||||| |||||||| ||||||||||| | ||||| |||||||| ||||| |
|
|
| T |
4196419 |
ttcccattttgttaacaccatttgctttatcttgttcaaatcttcacgtgtgagcttgaacgtagcacg |
4196351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 4246947 - 4246892
Alignment:
| Q |
16 |
atgcccctaaacacagtttccaaaatagttattttgtattggtggttctaaccttg |
71 |
Q |
| |
|
||||||| ||| ||||||||||| |||||||||| ||||||||||| |||||||| |
|
|
| T |
4246947 |
atgcccccaaatacagtttccaatatagttatttgctattggtggttttaaccttg |
4246892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4778 times since January 2019
Visitors: 5752