View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0780_low_1 (Length: 657)
Name: NF0780_low_1
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 13 - 562
Target Start/End: Original strand, 14550519 - 14551069
Alignment:
| Q |
13 |
aatataaatgacaaattacaattacaagttcttggatctccaaaataacttggactcatcagaaacaaggaatgaaaaccttgggagctgtataataata |
112 |
Q |
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| T |
14550519 |
aatataaatgacaaattacaattacaagttcttggatctccaaaataacttggactcatcagaaacaaggaatgaaaaccttgggagctgtataataata |
14550618 |
T |
|
| Q |
113 |
ataatgcagtttggtagcattatatatttaactaatgggaggaggaagtgattctgatgaatactgaaaactgattatagaaccttttacaaaacaatcc |
212 |
Q |
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| T |
14550619 |
ataatgcagtttggtagcattatatatttaactaataggaggaggaagtgattctgatgaatactgaaaactgattatagaaccttttacaaaacaatcc |
14550718 |
T |
|
| Q |
213 |
cgtgtagaacgggtgatatacaagattattaaaactttcacatgcactcccggaatttaagctgttttctacagcagctttttcgtttgaaagaacgttc |
312 |
Q |
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| T |
14550719 |
cgtgtagaacgggtgatatacaagattattaaaactttcacatgcactcccggaatttaagctgttttctacagcagctttttcgtttgaaagaacgttc |
14550818 |
T |
|
| Q |
313 |
aatgccatgaatatctt-nnnnnnnacgcactctgccttaccctgtcctagtgctttgttttgttattgttcactatgagcttctgctattaacctttag |
411 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14550819 |
aatgccatgaatatcttccccccccacgcactctgccttaccctgtcttagtgctttgttttgttattgttcactatgagcttctgctattaacctttag |
14550918 |
T |
|
| Q |
412 |
acaattggaggaaccataacactagtcgatttatagggtccctctttggaaaagaaacctatcttattctcttgatagtagagtatagttttggttggga |
511 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14550919 |
acaattggaggaaccataacacttgtcgatttagagggtccctctttggaaaagaaacctatcttattctcttgatagtagagtatagttttggttggga |
14551018 |
T |
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| Q |
512 |
catttgcttttgggaacaattttcgtactcatgctactactggcatgttac |
562 |
Q |
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| T |
14551019 |
catttgcttttgggaacaattttcgtactcatgctactactggcatgttac |
14551069 |
T |
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