View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0780_low_10 (Length: 431)
Name: NF0780_low_10
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_low_10 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 157 - 431
Target Start/End: Original strand, 39954823 - 39955097
Alignment:
| Q |
157 |
aatgaagcaatgaagctgagggaagaaacagatgaactcaagaaagggaatgaaacactgaagcttgaactcaagcacaaagatgatattagtaatgaac |
256 |
Q |
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| T |
39954823 |
aatgaagtaatgaagctgagggaagaaacagatgaactcaagaaagggaatgaaacactgaagcttgaactgaagcacaaagatgatattagtaatgaac |
39954922 |
T |
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| Q |
257 |
taatgaagttgaaggaggagatagaacgactcgagaaagagaatgaagcgcaaaaggctgaactcaaagagaaagataccatatgcaatgaggtagtgaa |
356 |
Q |
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| T |
39954923 |
taatgaagttgaaggaggagatagaacgactcgagaaagagaatgaagcgcaaaaggctgaactcaaagagaaagataccatatgcaatgaggtagtgaa |
39955022 |
T |
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| Q |
357 |
gttgagggaagagaatgaagctcagagagatgaactgaagcagaaagataccatttgcaatgaagtaatgaagtt |
431 |
Q |
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| T |
39955023 |
gttgagggaagagaatgaagctcagagagatgaactgaagcagaaagataccatttgcaatgaagtaatgaagtt |
39955097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 39954823 - 39954971
Alignment:
| Q |
16 |
aatgaagcaatgaagctgagggaagaaacagatgaactcaagaaagggaatgaaacactgaagcttgaactcaagcacaaagatgatattagtaatgaac |
115 |
Q |
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| T |
39954823 |
aatgaagtaatgaagctgagggaagaaacagatgaactcaagaaagggaatgaaacactgaagcttgaactgaagcacaaagatgatattagtaatgaac |
39954922 |
T |
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| Q |
116 |
taatgaagttgaaggaggagatagaacgactcgagaaagagaatgaagc |
164 |
Q |
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| T |
39954923 |
taatgaagttgaaggaggagatagaacgactcgagaaagagaatgaagc |
39954971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 368
Target Start/End: Original strand, 39954648 - 39954848
Alignment:
| Q |
168 |
gaagctgagggaagaaacagatgaactcaagaaagggaatgaaacactgaagcttgaactcaagcacaaagatgatattagtaatgaactaatgaagttg |
267 |
Q |
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| T |
39954648 |
gaagttgagggaagaaatagaacaactgaagaaagtgaataatgcacagaaggatggactcaatcagaaagataccatttgtaatgacgtaatgaagttg |
39954747 |
T |
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| Q |
268 |
aaggaggagatagaacgactcgagaaagagaatgaagcgcaaaaggctgaactcaaagagaaagataccatatgcaatgaggtagtgaagttgagggaag |
367 |
Q |
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| T |
39954748 |
agggacgagattaaacaactcgagaaagaaaatgaagcacagaagaatgaactcaagcagaaaggtaccatcaataatgaagtaatgaagctgagggaag |
39954847 |
T |
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| Q |
368 |
a |
368 |
Q |
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| T |
39954848 |
a |
39954848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 368
Target Start/End: Original strand, 39955031 - 39955106
Alignment:
| Q |
293 |
aagagaatgaagcgcaaaaggctgaactcaaagagaaagataccatatgcaatgaggtagtgaagttgagggaaga |
368 |
Q |
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| T |
39955031 |
aagagaatgaagctcagagagatgaactgaagcagaaagataccatttgcaatgaagtaatgaagttgagggaaga |
39955106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 165
Target Start/End: Original strand, 39954648 - 39954786
Alignment:
| Q |
27 |
gaagctgagggaagaaacagatgaactcaagaaagggaatgaaacactgaagcttgaactcaagcacaaagatgatattagtaatgaactaatgaagttg |
126 |
Q |
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| T |
39954648 |
gaagttgagggaagaaatagaacaactgaagaaagtgaataatgcacagaaggatggactcaatcagaaagataccatttgtaatgacgtaatgaagttg |
39954747 |
T |
|
| Q |
127 |
aaggaggagatagaacgactcgagaaagagaatgaagca |
165 |
Q |
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| T |
39954748 |
agggacgagattaaacaactcgagaaagaaaatgaagca |
39954786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 370
Target Start/End: Original strand, 39954648 - 39954757
Alignment:
| Q |
261 |
gaagttgaaggaggagatagaacgactcgagaaagagaatgaagcgcaaaaggctgaactcaaagagaaagataccatatgcaatgaggtagtgaagttg |
360 |
Q |
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|||||||| ||| || ||||||| ||| |||||| |||| | || || |||| || |||||| ||||||||||||| || ||||| ||| |||||||| |
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| T |
39954648 |
gaagttgagggaagaaatagaacaactgaagaaagtgaataatgcacagaaggatggactcaatcagaaagataccatttgtaatgacgtaatgaagttg |
39954747 |
T |
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| Q |
361 |
agggaagaga |
370 |
Q |
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| T |
39954748 |
agggacgaga |
39954757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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