View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0780_low_100 (Length: 211)

Name: NF0780_low_100
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0780_low_100
NF0780_low_100
[»] chr7 (5 HSPs)
chr7 (1-126)||(45273825-45273950)
chr7 (1-126)||(45282069-45282194)
chr7 (14-117)||(45270306-45270409)
chr7 (1-112)||(45293409-45293520)
chr7 (1-112)||(45302369-45302480)


Alignment Details
Target: chr7 (Bit Score: 122; Significance: 9e-63; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 45273825 - 45273950
Alignment:
Q  1 ttgctaaatacttccatggtctgcccaagtaagaccgaattgtgaatctttctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45273825 ttgctaaatacttccatggtctgcccaagtaagaccgaattgtgaatctttctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaat 45273924  T
Q  101 accagtattcaaattcatcgtctctg 126  Q
    ||||||||||||||||||||| ||||    
T  45273925 accagtattcaaattcatcgtgtctg 45273950  T

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Target: chr7; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 45282069 - 45282194
Alignment:
Q  1 ttgctaaatacttccatggtctgcccaagtaagaccgaattgtgaatctttctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45282069 ttgctaaatacttccatggtctgcccaagtaagaccgaattgtgaatctttctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaat 45282168  T
Q  101 accagtattcaaattcatcgtctctg 126  Q
    ||||||||||||||||||||| ||||    
T  45282169 accagtattcaaattcatcgtgtctg 45282194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 45270306 - 45270409
Alignment:
Q  14 ccatggtctgcccaagtaagaccgaattgtgaatctttctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaataccagtattcaaa 113  Q
    ||||||||||||||||||||||| || ||||||| |||| |||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |    
T  45270306 ccatggtctgcccaagtaagacctaactgtgaatttttcagggaccaatgctgcttctgggatgatattgcagtcctggataacaataccagtattcata 45270405  T
Q  114 ttca 117  Q
    ||||    
T  45270406 ttca 45270409  T

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Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 45293409 - 45293520
Alignment:
Q  1 ttgctaaatacttccatggtctgcccaagtaagaccgaattgtgaatctttctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaat 100  Q
    ||||||||  ||||||||||||||||||||||||   ||||||||||||||  ||||||||||||||||||||||  ||||||||  | |||||||||||    
T  45293409 ttgctaaaaccttccatggtctgcccaagtaagatttaattgtgaatctttgagggaacaatgctgcttctgggacaatattgcagccttggatcacaat 45293508  T
Q  101 accagtattcaa 112  Q
    ||||||||||||    
T  45293509 accagtattcaa 45293520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 45302369 - 45302480
Alignment:
Q  1 ttgctaaatacttccatggtctgcccaagtaagaccgaattgtgaatctttctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaat 100  Q
    ||||||||  ||||||||||||||||||||||||   ||||||||||||||  ||||||||||||||||||||||  ||||||||  | |||||||||||    
T  45302369 ttgctaaaaccttccatggtctgcccaagtaagatttaattgtgaatctttgagggaacaatgctgcttctgggacaatattgcagccttggatcacaat 45302468  T
Q  101 accagtattcaa 112  Q
    ||||||||||||    
T  45302469 accagtattcaa 45302480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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