View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0780_low_101 (Length: 211)
Name: NF0780_low_101
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_low_101 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 221680 - 221604
Alignment:
| Q |
1 |
acttcgattcttgaatacacaacatcattggcttccttactgacaccaatttccgaacatccctcctcttctctgct |
77 |
Q |
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||||||||| |||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
221680 |
acttcgattattgaatacacaacatcatcggcttcctttctaacaccaatttccgaacatccctcctcttctctgct |
221604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 20694979 - 20694904
Alignment:
| Q |
1 |
acttcgattcttgaatacacaacatcattggcttccttactgacaccaatttccgaacatccctcctcttctctgc |
76 |
Q |
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|||| ||||||||||||||||||| | |||||||||| || |||||| | ||| ||| |||||| |||||||||| |
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| T |
20694979 |
acttagattcttgaatacacaacaccgttggcttcctctctaacaccagtctcctaacctccctcttcttctctgc |
20694904 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 20700457 - 20700382
Alignment:
| Q |
1 |
acttcgattcttgaatacacaacatcattggcttccttactgacaccaatttccgaacatccctcctcttctctgc |
76 |
Q |
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|
|||| ||||||||||||||||||| | |||||||||| || |||||| | ||| ||| |||||| |||||||||| |
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| T |
20700457 |
acttagattcttgaatacacaacaccgttggcttcctctctaacaccagtctcctaacctccctcttcttctctgc |
20700382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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