View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0780_low_104 (Length: 206)
Name: NF0780_low_104
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_low_104 |
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Alignment Details
Target: chr5 (Bit Score: 104; Significance: 5e-52; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 1760025 - 1760136
Alignment:
| Q |
1 |
aataacaacaaagaagggaaagatgaaaattagaacaagaacaaagagaaaaatttggattcaaggtctttttcatgtttattttgcaagagaaaatttg |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1760025 |
aataacaacaaagaagagaaagatgaaaattagaacaagaacaaagagaaaaatttggattcaaggtctttttcatgtttattttgcaagagaaaattta |
1760124 |
T |
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| Q |
101 |
ctacttcacagg |
112 |
Q |
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|||||||||||| |
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| T |
1760125 |
ctacttcacagg |
1760136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 1744360 - 1744426
Alignment:
| Q |
44 |
aagagaaaaatttggattcaaggtctttttcatgtttattttgcaagagaaaatttgctacttcaca |
110 |
Q |
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|||||||||| |||||||||||||||||||||| |||||||||||| |||||||| |||||||||| |
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| T |
1744360 |
aagagaaaaaaatggattcaaggtctttttcatgcttattttgcaagggaaaattttctacttcaca |
1744426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 1724448 - 1724496
Alignment:
| Q |
64 |
aggtctttttcatgtttattttgcaagagaaaatttgctacttcacagg |
112 |
Q |
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| T |
1724448 |
aggtctttttcatgcttattttgcaagagaaaattttctacttcacagg |
1724496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 1739005 - 1739080
Alignment:
| Q |
32 |
agaacaagaacaaagagaaaaatttggattcaaggtctttttcatgtttattttgcaagagaaaatttgctacttc |
107 |
Q |
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| T |
1739005 |
agaacaagaatgaggagaaaaaaatggattcaaggactttttcatgcttattttgcaagggaaaattttctacttc |
1739080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 2022788 - 2022851
Alignment:
| Q |
44 |
aagagaaaaatttggattcaaggtctttttcatgtttattttgcaagagaaaatttgctacttc |
107 |
Q |
| |
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||||||| |||| ||||||| |||||||||||||| |||||||||||||||||| ||||||| |
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| T |
2022788 |
aagagaagaattcagattcaaagtctttttcatgttgtttttgcaagagaaaattttctacttc |
2022851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 3157034 - 3156968
Alignment:
| Q |
44 |
aagagaaaaatttggattcaaggtctttttcatgtttattttgcaagagaaaatttgctacttcaca |
110 |
Q |
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||||||| |||| ||||||||||||||||||||| | ||||| |||||| ||||| |||||||||| |
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| T |
3157034 |
aagagaagaattcggattcaaggtctttttcatgctccttttgtaagagacaattttctacttcaca |
3156968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 3167250 - 3167302
Alignment:
| Q |
58 |
gattcaaggtctttttcatgtttattttgcaagagaaaatttgctacttcaca |
110 |
Q |
| |
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||||||| |||||||||||||| |||||||||||||||||| |||| ||||| |
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| T |
3167250 |
gattcaaagtctttttcatgttgtttttgcaagagaaaattttctacatcaca |
3167302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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