View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0780_low_14 (Length: 399)
Name: NF0780_low_14
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 35071297 - 35071509
Alignment:
| Q |
22 |
catcatcatcgcgatcatcgccgccaccttcgtggtggccgacgatgacgccaccgtcatgcaaagccttcggcaatcccttaaaccttctcctaacggc |
121 |
Q |
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| T |
35071297 |
catcatcatcgcgatcatcgccgccaccttcgtggtggccgacgatgacggcaccgtcatgcaaagccttcggcaatcccttaaaccttctcctaacggc |
35071396 |
T |
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| Q |
122 |
tggtcttccaatacttccttctgtcaatggtccggcgtcaaatgctcatccgacaaccgcgtcaccagcataaacctctccgatcaaaagcttgccggta |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
35071397 |
tggtcttccaatacttccttctgtcaatggtccggcgtcaaatgctcatccgacaaccgcgtcaccagcataaacctctccgatcaaaagctcgccggaa |
35071496 |
T |
|
| Q |
222 |
cccttcccgataa |
234 |
Q |
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||||||||||||| |
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| T |
35071497 |
cccttcccgataa |
35071509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 370
Target Start/End: Original strand, 35071601 - 35071645
Alignment:
| Q |
326 |
acagacgttaatctcggcagtaacaacttctcctcggtaactccc |
370 |
Q |
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|||||||||||||||||||| || ||||||||||| ||||||||| |
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| T |
35071601 |
acagacgttaatctcggcagcaataacttctcctccgtaactccc |
35071645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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