View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0780_low_15 (Length: 399)
Name: NF0780_low_15
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_low_15 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 89 - 389
Target Start/End: Original strand, 42268530 - 42268828
Alignment:
| Q |
89 |
ctcgtctggctcatcttgagttaacggtgatgcgagtggtggctgatgttagtaacataaggtgacgactgttggttttttgagttaacgatgatgtggg |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42268530 |
ctcgtctggctcatcttgagttaacggtgatgcgagtggtggctgatgttagtaacataaggtgacgactgttggttttttgagttaacgatgatgtggg |
42268629 |
T |
|
| Q |
189 |
tggttattggtgttggttacatattgtttttgttgttgggttgggagttgaaacgtaaatggtgtcttttttgcgtggtggtgatattttggtgttaatg |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42268630 |
tggttattggtgttggttacatattgtttttgttgttgggttgggagttgaaacgtaaatggtgtcttttttgcgtggtggtgatattttggtgttaatg |
42268729 |
T |
|
| Q |
289 |
attagaaacttgtgagttggttttgtttttgggaaannnnnnnnccgtttgttgtgtttcgtgctggtttacattatggtgttgatactgggtattctgt |
388 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||| ||||||||||| |||||||| ||| |
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| T |
42268730 |
attagaaacttgtgagttgggtttgtttttgggaa--tttttttccatttgttgtgtttcgtgctggtttacattgtggtgttgatattgggtattttgt |
42268827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 164 - 320
Target Start/End: Original strand, 40599702 - 40599857
Alignment:
| Q |
164 |
ttttttgagttaacgatgatgtgggtggttattggtgttggttacatattgtttttgttgttgggttgggagttgaaacgtaaatggtgtcttttttgcg |
263 |
Q |
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|
|||||||||| |||||||||||||||||||||| |||||||||||||| ||||||| ||||||||| ||||| || |||| ||||||||||||||| |
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| T |
40599702 |
ttttttgagtcaacgatgatgtgggtggttattagtgttggttacataaggtttttgcacttgggttggtagttggaatgtaa-tggtgtcttttttgca |
40599800 |
T |
|
| Q |
264 |
tggtggtgatattttggtgttaatgattagaaacttgtgagttggttttgtttttgg |
320 |
Q |
| |
|
||||||||||||||||||||| ||| | |||| |||||||||||||||| ||||||| |
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|
| T |
40599801 |
tggtggtgatattttggtgttgatgttgagaagcttgtgagttggttttatttttgg |
40599857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 89 - 381
Target Start/End: Complemental strand, 24718427 - 24718138
Alignment:
| Q |
89 |
ctcgtctggctcatcttgagttaacggtgatgcgagtggtggctgatgttagtaacataaggtgacgactgttggttttttgagttaacgatgatgtggg |
188 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24718427 |
ctcgtccggctcatcttgagttaacggtgatgcgagtggtggttgatgtttgtaacataaggtgacgactgttggttttttgagttaacgatgatgtggg |
24718328 |
T |
|
| Q |
189 |
tggttattggtgttggttacatattgtttttgttgttgggttgggagttgaaacgtaaatggtgtcttttttgcgtggtggtgatattttggtgttaatg |
288 |
Q |
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|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
24718327 |
tggttattggtgttggttacat-ttgtttttgttgttgggttgggagttgaaacgtaaatggtgtcttttttgtgtggtggtgatattttggtattaatg |
24718229 |
T |
|
| Q |
289 |
attagaaacttgtgagttggttttgtttttgggaaannnnnnnnccgtttgttgtgtttcgtgctggtttacattatggtgttgatactgggt |
381 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| | |||| ||| ||| ||||||||||||||||| ||||||||||||||||| |
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| T |
24718228 |
attagaagcttgtgagttggttttgtttttggg--attttttttccgtctgtggtgcttcgtgctggtttacatggtggtgttgatactgggt |
24718138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 89 - 320
Target Start/End: Original strand, 43032197 - 43032427
Alignment:
| Q |
89 |
ctcgtctggctcatcttgagttaacggtgatgcgagtggtggctgatgttagtaacataaggtgacgactgttggttttttgagttaacgatgatgtggg |
188 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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|
| T |
43032197 |
ctcgtccggctcatcttgagttaacggtgatgtgagtggtggttggtgttagtaacataaggtgacggttgttggttttttgagctaacgatgatgtggg |
43032296 |
T |
|
| Q |
189 |
tggttattggtgttggttacatattgtttttgttgttgggttgggagttgaaacgtaaatggtgtcttttttgcgtggtggtgatattttggtgttaatg |
288 |
Q |
| |
|
||||||||||||||||||||||| | ||||| |||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
43032297 |
tggttattggtgttggttacata-aggttttgctgttgggttgggagttagaatgtaaatggtgtattttttgcgtggtggtgatattttggtgttgatg |
43032395 |
T |
|
| Q |
289 |
attagaaacttgtgagttggttttgtttttgg |
320 |
Q |
| |
|
|| |||| |||||| ||||||||||||||||| |
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| T |
43032396 |
atgagaagcttgtgtgttggttttgtttttgg |
43032427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 89 - 320
Target Start/End: Complemental strand, 31699636 - 31699405
Alignment:
| Q |
89 |
ctcgtctggctcatcttgagttaacggtgatgcgagtggtggctgatgttagtaacataaggtgacgactgttggttttttgagttaacgatgatgtggg |
188 |
Q |
| |
|
|||||| | ||||||||||||||||| |||||| |||||||| | |||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
31699636 |
ctcgtccgactcatcttgagttaacgctgatgcaagtggtggtttgtgttagtaacataaggtgacgattgttggttttttgaggtaacgatgatgtggg |
31699537 |
T |
|
| Q |
189 |
tggttattggtgttggttacatattgtttttgttgttgggttgggagttgaaacgtaaatggtgtcttttttgcgtggtggtgatattttggtgttaatg |
288 |
Q |
| |
|
|| |||| |||||||| ||| || ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
31699536 |
tgcttataggtgttggctacgtaaggtttttgttgttgggttgggagttggaacgtaaatggtgtcttttttgtatggtggtgatattttggtgttgatg |
31699437 |
T |
|
| Q |
289 |
attagaaacttgtgagttggttttgtttttgg |
320 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |
|
|
| T |
31699436 |
attagaagcttgtgagttggttttgtttttgg |
31699405 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 96 - 261
Target Start/End: Original strand, 2077151 - 2077315
Alignment:
| Q |
96 |
ggctcatcttgagttaacggtgatgcgagtggtggctgatgttagtaacataaggtgacgactgttggttttttgagttaacgatgatgtgggtggttat |
195 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| || ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
2077151 |
ggctcatcttgagttaacagtgatgcgagtggtggttggtgtcagtaacataaggtgacggttgttggttttttgagttaacgatgatgtgggtggttat |
2077250 |
T |
|
| Q |
196 |
tggtgttggttacatattgtttttgttgttgggttgggagttgaaacgtaaatggtgtcttttttg |
261 |
Q |
| |
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||||| |||||||||| ||||||| ||||||||||||| ||| || ||||||||||||||||||| |
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|
| T |
2077251 |
tggtgatggttacata-ggtttttgatgttgggttgggatttggaatgtaaatggtgtcttttttg |
2077315 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 89 - 318
Target Start/End: Complemental strand, 9911035 - 9910828
Alignment:
| Q |
89 |
ctcgtctggctcatcttgagttaacggtgatgcgagtggtggctgatgttagtaacataaggtgacgactgttggttttttgagttaacgatgatgtggg |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| | ||||||| |||||||| |
|
|
| T |
9911035 |
ctcgtctggctcatcttgagttaacggtgatgcgagtgatggttggtgttagtaacataacgcgacgact----------------------gatgtggg |
9910958 |
T |
|
| Q |
189 |
tggttattggtgttggttacatattgtttttgttgttgggttgggagttgaaacgtaaatggtgtcttttttgcgtggtggtgatattttggtgttaatg |
288 |
Q |
| |
|
||||||| ||||||||||||||| |||||| |||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
9910957 |
tggttataggtgttggttacataaggtttttcctgttgggttgggagtttgaacttaaatggtgtattttttgcgtggtggtgatattttggtgttgatg |
9910858 |
T |
|
| Q |
289 |
attagaaacttgtgagttggttttgttttt |
318 |
Q |
| |
|
||||||| ||||| |||||||||||||||| |
|
|
| T |
9910857 |
attagaagcttgtaagttggttttgttttt |
9910828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 180 - 381
Target Start/End: Complemental strand, 9910966 - 9910759
Alignment:
| Q |
180 |
tgatgtgggtggttattggtgttggttacatattgtttttgttgttgggttgggagttgaaacgtaaatggtgtcttttttgcgtggtggtgatattttg |
279 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||| |||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||| |
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|
| T |
9910966 |
tgatgtgggtggttataggtgttggttacataaggtttttcctgttgggttgggagtttgaacttaaatggtgtattttttgcgtggtggtgatattttg |
9910867 |
T |
|
| Q |
280 |
gtgttaatgattagaaacttgtgagttggttttgtttttgggaaannnnnnnn------ccgtttgttgtgtttcgtgctggtttacattatggtgttga |
373 |
Q |
| |
|
||||| |||||||||| ||||| |||||||||||||||| || | |||||||| ||| |||||| |||||| ||| |||||||||| |
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|
| T |
9910866 |
gtgttgatgattagaagcttgtaagttggttttgttttttgggatttttttttgtttttccgtttgtggtgcttcgtggtggtttccatgatggtgttga |
9910767 |
T |
|
| Q |
374 |
tactgggt |
381 |
Q |
| |
|
|||||||| |
|
|
| T |
9910766 |
tactgggt |
9910759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 224 - 321
Target Start/End: Complemental strand, 23636135 - 23636038
Alignment:
| Q |
224 |
ttgggttgggagttgaaacgtaaatggtgtcttttttgcgtggtggtgatattttggtgttaatgattagaaacttgtgagttggttttgtttttggg |
321 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||| ||||||| || | ||||||||||||||||||||||| |
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|
| T |
23636135 |
ttgggttgggagttggaacgtaaatgatgtcttttttgcgtggtggtgatattttagtgttgatgattataagcatgtgagttggttttgtttttggg |
23636038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 67162 - 67273
Alignment:
| Q |
97 |
gctcatcttgagttaacggtgatgcgagtggtggctgatgttagtaacataaggtgacgactgttgg---ttttttgagttaacgatgatgtgggtggtt |
193 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||||| ||||||||| ||||||||||||| |||||| | ||||||||||||| |||||| ||| ||| |
|
|
| T |
67162 |
gctcatcttgagataacggttatgcgggtggtggttgatgttagcaacataaggtgaccgttgttggtgttattttgagttaacggtgatgtaggtagtt |
67261 |
T |
|
| Q |
194 |
attggtgttggt |
205 |
Q |
| |
|
|||||||||||| |
|
|
| T |
67262 |
attggtgttggt |
67273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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