View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0780_low_19 (Length: 378)
Name: NF0780_low_19
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_low_19 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 23 - 368
Target Start/End: Original strand, 7934600 - 7934946
Alignment:
| Q |
23 |
cattgttacaatatgtgccatagacgagttctttgtttctcattgttacaatatgtgccatagacgagttctttgtttctcgataagattcagattttag |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7934600 |
cattgttacaatatgtgccatagacgagttctttgtttctcattgttacaatatgtgccatagacgagttctttgtttctcgataagattcagattttag |
7934699 |
T |
|
| Q |
123 |
attaaaaaataataattggtcataagataccatttagtgactacctatgatgattatatgaattaatatttaaccaaaagttaaggccaatgttttgcat |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7934700 |
attaaaaaataataattggtcataagataccatttagtgactacctaggatgattatatgaattaatatttaaccaaaagttaaggccaatgttttgcat |
7934799 |
T |
|
| Q |
223 |
agtttgctttgttgggaacaatgtttatctccattacaaacaaatgtttcatcattatcttatttttcattgttgtgtcttatgtacatccattatataa |
322 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7934800 |
agtttgctttgttgggaacaatgtttgtctccattacaaacaaatgtttcatcattatcttatttttcattgttgtgtcttatgtacatccattatataa |
7934899 |
T |
|
| Q |
323 |
atgcaatggcctt-gcataattgtccacactgataccctcccctttg |
368 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7934900 |
atgcaatggccttcacataattgtccacactgataccctcccctttg |
7934946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 7934618 - 7934680
Alignment:
| Q |
1 |
catagacgagttctttgtttctcattgttacaatatgtgccatagacgagttctttgtttctc |
63 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7934618 |
catagacgagttctttgtttctcattgttacaatatgtgccatagacgagttctttgtttctc |
7934680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 6182 times since January 2019
Visitors: 5762