View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0780_low_2 (Length: 628)
Name: NF0780_low_2
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 79 - 545
Target Start/End: Original strand, 31698803 - 31699267
Alignment:
| Q |
79 |
agatgaagaggtagatggagacatagaagaagtgtgaaataggattggatatggaaaccaatactcatttaacataacatacttaaatgcccagatgcaa |
178 |
Q |
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| T |
31698803 |
agatgaagaggtagatggagaca--gaagaagtgtgaaataggattggatatggaaaccaatactcatttaacataacatccttaaatgcccagatgcaa |
31698900 |
T |
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| Q |
179 |
ccatcttgcaagacatttgcaccctttgtgattgtgtgataaaccaaaaaatacactccttggatctgaaatccattttaggctgattgtaaggcatcag |
278 |
Q |
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| T |
31698901 |
ccatcttgcaagacatttgcaccctttgtgattgtgtgataaacccaaaaatacactccttggatctgaaatccattttaggctgattgtaaggcatcag |
31699000 |
T |
|
| Q |
279 |
aaatgaaaagcaagcatgtccgatgttcttaaatccttgttatgaggtatggtaggaacttattaagtgtggcatggggaatataattagattgcagatg |
378 |
Q |
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| T |
31699001 |
aaatgaaaagcaagcatgtccgatgttcttaaatccttgttatgaggtagggtaggaacttattaagtgtggcatggggaatataattagattgctgatg |
31699100 |
T |
|
| Q |
379 |
aacggagtctgttgataggtatacagcaatgtaaaaactgaaatcccattaggaaagcggtatggaggagggatgggcaagtagagttagacccttttat |
478 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31699101 |
aacggagtctgttgataggtatacagcaatgcaaaaactgaaatcccattaggaaagcggtatggaggagggatgggcaagtagagttagacccttttat |
31699200 |
T |
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| Q |
479 |
actatttgtcgatttatattcaaccaaaccattttggttagatgtgctagtcaatctatggatgatg |
545 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31699201 |
actatttgtcaatttattttcaaccaaaccattttggttagatgtgctagtcaatctatggatgatg |
31699267 |
T |
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