View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0780_low_20 (Length: 369)
Name: NF0780_low_20
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_low_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 67 - 369
Target Start/End: Complemental strand, 55080874 - 55080572
Alignment:
| Q |
67 |
tcacacccaactcatttccacatacacttcatgctttccaagtaacaatcttcaaacacttaccaatagtttcttcaaatgcatgaattccaccaaccca |
166 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55080874 |
tcacacccaactcatttccacatacacttcattctttccaagcaacaatcttcaaacacttaccaatagtttcttcaaatgcatgaattccaccaaccca |
55080775 |
T |
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| Q |
167 |
ttacatttcaatgtcatcatatctcatttctgtcgtaaaggtttcccctttcttgctctcaccaccttttcctttatgcacaccaatcacgttcctttgg |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55080774 |
ttacatttcaatgtcatcatatctcatttctgtcgtaaaggtttcccctttcttgctctcaccaccttttcctttatgcacaccaatcacgttcctttgg |
55080675 |
T |
|
| Q |
267 |
atacatactctttgtgtagcactttgaccgcttcatctaaattcaaagacatcaattttgggaaacagatacatgcccacgttgaaaaatcaggttggtc |
366 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55080674 |
atacatacgctttgtgtagcactttgaccgcttcatctaaattcaaagacgtcaattttgggaaacagatacatgcccacgttgaaaaatcaggttggtc |
55080575 |
T |
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| Q |
367 |
ttc |
369 |
Q |
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||| |
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| T |
55080574 |
ttc |
55080572 |
T |
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