View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0780_low_22 (Length: 364)
Name: NF0780_low_22
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 21 - 231
Target Start/End: Original strand, 42771081 - 42771291
Alignment:
| Q |
21 |
atgtaataataataaaactgattnnnnnnnntaatggtgaattggataaacaaataaatgttagagatgcacactagatcaataacgaatggaggtacat |
120 |
Q |
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| T |
42771081 |
atgtaataataataaaactgattaaaaaaaataatggtgaattgaataaacaaataaatgttagagatacacactagatcaataatgaatggaggtacat |
42771180 |
T |
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| Q |
121 |
tataattttcgagaagtacacacccgaacaagcaatataacaaagaaagaatactaacacctaaacgagaggctcactgcataacagcgaatgaaataaa |
220 |
Q |
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| T |
42771181 |
tataattttcgagaagtacacaccagaacaagcaatataacaaagaaagaatactaacacctaaacgagaggctcactgcataacagcgaatgaaataaa |
42771280 |
T |
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| Q |
221 |
taaatgaaagt |
231 |
Q |
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| T |
42771281 |
taaatgaaagt |
42771291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 42771737 - 42771682
Alignment:
| Q |
53 |
aatggtgaattggataaacaaataaatgttagagatgcacactagatcaataacgaa |
109 |
Q |
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||||||| |||| |||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
42771737 |
aatggtggattgaataaacaaataaatgtta-agagacacactagatcaataacgaa |
42771682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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