View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0780_low_25 (Length: 339)
Name: NF0780_low_25
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 26 - 230
Target Start/End: Original strand, 36775301 - 36775505
Alignment:
| Q |
26 |
ttatcttcatctccaatgaaaaaatacgattccaccatagtcactggtgaattggatatatggagttcactcttgacccnnnnnnngaaagatgaagctt |
125 |
Q |
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| T |
36775301 |
ttatcttcatctccaatgaaaaaatacgattccaccatagtcactggtgaattggatatatggagttcaatcttgacccaaaaaaagaaagatgaagctt |
36775400 |
T |
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| Q |
126 |
cacaatcaaaaactcctccttatattcatccacttgtgaaaaattcaaagaattatctaagtgctaagagtcttgaaatttgcaccgagagccttggatc |
225 |
Q |
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| T |
36775401 |
cacaatcaaaaactcctccttatattcacccacttgtgaaaaattcacaaaattatttaagtgaaaagagtcttgaaatgtgcactgagattcttggatc |
36775500 |
T |
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| Q |
226 |
agaaa |
230 |
Q |
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||||| |
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| T |
36775501 |
agaaa |
36775505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 64 - 234
Target Start/End: Original strand, 36760025 - 36760195
Alignment:
| Q |
64 |
agtcactggtgaattggatatatggagttcactcttgacccnnnnnnngaaagatgaagcttcacaatcaaaaactcctccttatattcatccacttgtg |
163 |
Q |
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| T |
36760025 |
agtcactagtgaattggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacaatcaaaaactcctccttatattcatccacttgtg |
36760124 |
T |
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| Q |
164 |
aaaaattcaaagaattatctaagtgctaagagtcttgaaatttgcaccgagagccttggatcagaaactgg |
234 |
Q |
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| T |
36760125 |
aaaaattcaaacaattatctaagtgctaagagtcttgaaatttgcaccgagagccttggatcagaaactgg |
36760195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 72 - 234
Target Start/End: Original strand, 36788029 - 36788191
Alignment:
| Q |
72 |
gtgaattggatatatggagttcactcttgacccnnnnnnngaaagatgaagcttcacaatcaaaaactcctccttatattcatccacttgtgaaaaattc |
171 |
Q |
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| T |
36788029 |
gtgaattggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacaatcaaaaactcctccttatattcatccacttgtgaaaaattc |
36788128 |
T |
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| Q |
172 |
aaagaattatctaagtgctaagagtcttgaaatttgcaccgagagccttggatcagaaactgg |
234 |
Q |
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| T |
36788129 |
aaacaattatctaagtgctaagagtcttgaaatttgcaccgagagccttggatcagaaactgg |
36788191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 72 - 222
Target Start/End: Original strand, 36796432 - 36796582
Alignment:
| Q |
72 |
gtgaattggatatatggagttcactcttgacccnnnnnnngaaagatgaagcttcacaatcaaaaactcctccttatattcatccacttgtgaaaaattc |
171 |
Q |
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||||||||||||||||||||||| |||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36796432 |
gtgaattggatatatggagttcaatcttgaaccaaaagaacaaagatgaagcttcacattcaaaaactcctccttatattcacccacttgtgaaaaattc |
36796531 |
T |
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| Q |
172 |
aaagaattatctaagtgctaagagtcttgaaatttgcaccgagagccttgg |
222 |
Q |
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||| || ||| |||||| |||||||| |||| ||||||||||| ||||| |
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| T |
36796532 |
aaaaaactatttaagtgaaaagagtctcaaaatctgcaccgagagtcttgg |
36796582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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