View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0780_low_26 (Length: 332)
Name: NF0780_low_26
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 80 - 237
Target Start/End: Original strand, 27838397 - 27838554
Alignment:
| Q |
80 |
agcacagaacgcacttttacaatctcatcccaatttgattcctataaatacccatctcaaggatatgacatttcaacattttccataatgacaatttcga |
179 |
Q |
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| T |
27838397 |
agcacaaaacgcacttttacaatctcatcccaatttgattcctataaatacccatctcaaggatatgacatttcaacattttccataatgacaatttcga |
27838496 |
T |
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| Q |
180 |
aagttcttagtannnnnnnctttgtgttgttaggtttaggtatttgctctgccgctag |
237 |
Q |
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| T |
27838497 |
aagttcttggtatttttttctttgtgttgttaggtttcggtatttgctctgccgctag |
27838554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 237
Target Start/End: Original strand, 27832903 - 27832974
Alignment:
| Q |
166 |
aatgacaatttcgaaagttcttagtannnnnnnctttgtgttgttaggtttaggtatttgctctgccgctag |
237 |
Q |
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| T |
27832903 |
aatggcaacttcgaaagttcttagtattttgttctttgtgttgttaggtttcggcatttgctctgctgctag |
27832974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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