View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0780_low_27 (Length: 331)

Name: NF0780_low_27
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0780_low_27
NF0780_low_27
[»] chr7 (5 HSPs)
chr7 (99-235)||(26805266-26805402)
chr7 (99-160)||(26824166-26824227)
chr7 (120-167)||(26824087-26824134)
chr7 (119-168)||(26836036-26836085)
chr7 (109-165)||(26800234-26800290)


Alignment Details
Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 99 - 235
Target Start/End: Complemental strand, 26805402 - 26805266
Alignment:
Q  99 gttggaagcaccggcatcggcggtgcagaggcagatggttgtggttgataaggataggccatgatgatagcgatgatatgaatgttatgttttgttatga 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  26805402 gttggaagcaccggcatcggcggtgcagaggcagatggttgtggttgataaggataagccatgatgatagtgatgatatgaatgttatgttttgttatga 26805303  T
Q  199 acttatgatagctctttaattttaatttgtctctgtg 235  Q
    |||||||||||||||||||||||||||||||||||||    
T  26805302 acttatgatagctctttaattttaatttgtctctgtg 26805266  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 26824227 - 26824166
Alignment:
Q  99 gttggaagcaccggcatcggcggtgcagaggcagatggttgtggttgataaggataggccat 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  26824227 gttggaagcaccggcatcggcggtgcagaggcagatggttgtggttgacaaggataagccat 26824166  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 26824134 - 26824087
Alignment:
Q  120 ggtgcagaggcagatggttgtggttgataaggataggccatgatgata 167  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||    
T  26824134 ggtgcagaggcagaaggttgtggttgataaggataagccatgatgata 26824087  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 26836085 - 26836036
Alignment:
Q  119 cggtgcagaggcagatggttgtggttgataaggataggccatgatgatag 168  Q
    ||||||||||| ||| |||||||||||||||||||| |||||||||||||    
T  26836085 cggtgcagaggaagaaggttgtggttgataaggataagccatgatgatag 26836036  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 26800290 - 26800234
Alignment:
Q  109 ccggcatcggcggtgcagaggcagatggttgtggttgataaggataggccatgatga 165  Q
    ||||||||||||||||||| ||| || | ||||||||||||||||| ||||| ||||    
T  26800290 ccggcatcggcggtgcagaagcatattgctgtggttgataaggataagccataatga 26800234  T

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