View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0780_low_29 (Length: 331)
Name: NF0780_low_29
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_low_29 |
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| [»] scaffold0303 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 18119684 - 18119381
Alignment:
| Q |
16 |
atgccagcaccggtgcggttgtgggggatagaaaaagccgcgtcaacgttacatttgaaacgaccactcgcagggggatgccacttgatctgttgcggtt |
115 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
18119684 |
atgccaacaccggtgcggttatgggggatagaaaaagccgcgacaacgttacatttcaaacgaccactcgcagggggctgccatttgatctgttgcggtt |
18119585 |
T |
|
| Q |
116 |
caggagtagcagatgccccaagaacagtagctgaactgttcccagcagcagcctattgctgcagaccgtgtggtgcaggctgagttgcgggctgcatata |
215 |
Q |
| |
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||| ||||||||||||| ||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18119584 |
cagcagtagcagatgccgcaagaacagcagctgaactgttcacagcagcagcctgttgctgcagaccgtgtggtgcaggctgagttgcgggctgcatatc |
18119485 |
T |
|
| Q |
216 |
tggtcgcaaactgttagcgaactcccaatcatcctgcgtaactttagctctttcaattactgctgcacatcactccgtaacatccttcctaaccattaca |
315 |
Q |
| |
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|| ||||||||||||||| |||||||||||||| || ||| ||||||||||||||| || ||||||||| ||||||||||||||| || |||| ||| | |
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| T |
18119484 |
tgttcgcaaactgttagcaaactcccaatcatctagcataaatttagctctttcaatcacagctgcacatgactccgtaacatcctcccaaacctttaaa |
18119385 |
T |
|
| Q |
316 |
ttac |
319 |
Q |
| |
|
|||| |
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|
| T |
18119384 |
ttac |
18119381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 331
Target Start/End: Complemental strand, 10770960 - 10770645
Alignment:
| Q |
16 |
atgccagcaccggtgcggttgtgggggatagaaaaagccgcgtcaacgttacatttgaaacgaccactcgcagggggatgccacttgatctgttgcggtt |
115 |
Q |
| |
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|||||| ||||| ||| ||| ||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| ||||| |||||||||||||||| |
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|
| T |
10770960 |
atgccaacaccgatgcagttatggggtatagaaaaagccgcgtcactgttacatttcaaacgaccactcgcagggggctgccatttgatctgttgcggtt |
10770861 |
T |
|
| Q |
116 |
caggagtagcagatgccccaagaacagtagctgaactgttcccagcagcagcctattgctgcagaccgtgtggtgcaggctgagttgcgggctgcatata |
215 |
Q |
| |
|
||| ||||||||||||| |||||||| |||| | |||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10770860 |
cagcagtagcagatgccgcaagaacaacagctaatctgttcacagcagcagcctgttgctgcagaccgtgtggtgcaggctgagttgcgagctgcatatc |
10770761 |
T |
|
| Q |
216 |
tggtcgcaaactgttagcgaactcccaatcatcctgcgtaactttagctctttcaattactgctgcacatcactccgtaacatccttcctaaccattaca |
315 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| || |||||||| |||||||||| | |||||||| ||||||||||||||| || |||||||| | |
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| T |
10770760 |
tgttcgcaaactgttagcgaactcccaatcatctagcataactttaactctttcaatcgcatctgcacatgactccgtaacatcctcccaaaccattata |
10770661 |
T |
|
| Q |
316 |
ttacaccgtttccata |
331 |
Q |
| |
|
||| |||||||||| |
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|
| T |
10770660 |
ttagggcgtttccata |
10770645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0303 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0303
Description:
Target: scaffold0303; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 331
Target Start/End: Complemental strand, 13940 - 13625
Alignment:
| Q |
16 |
atgccagcaccggtgcggttgtgggggatagaaaaagccgcgtcaacgttacatttgaaacgaccactcgcagggggatgccacttgatctgttgcggtt |
115 |
Q |
| |
|
|||||| ||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
13940 |
atgccaacaccggtgcggttataggggatagaaaaagccgcgtcaacgttacatttcaaacgaccactcgcagggggctgccaattgatctgttgcggtt |
13841 |
T |
|
| Q |
116 |
caggagtagcagatgccccaagaacagtagctgaactgttcccagcagcagcctattgctgcagaccgtgtggtgcaggctgagttgcgggctgcatata |
215 |
Q |
| |
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||| ||||||||||||| ||||||||| ||||||||||||| |||||||||||| ||| || ||||||||||||||||| ||||||| ||||||||||| |
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| T |
13840 |
cagcagtagcagatgccgcaagaacagcagctgaactgttcacagcagcagcctgttgatgtagaccgtgtggtgcaggttgagttgtgggctgcatatc |
13741 |
T |
|
| Q |
216 |
tggtcgcaaactgttagcgaactcccaatcatcctgcgtaactttagctctttcaattactgctgcacatcactccgtaacatccttcctaaccattaca |
315 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||| ||| ||||||||||| || |||| ||| | |
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| T |
13740 |
tgttcggaaactgttagcgaactcccaatcatctagcataactttagctctttcaatcactgctgcacatgacttcgtaacatcctcccaaacctttaaa |
13641 |
T |
|
| Q |
316 |
ttacaccgtttccata |
331 |
Q |
| |
|
||||| |||||||||| |
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|
| T |
13640 |
ttacagcgtttccata |
13625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 331
Target Start/End: Complemental strand, 28860533 - 28860218
Alignment:
| Q |
16 |
atgccagcaccggtgcggttgtgggggatagaaaaagccgcgtcaacgttacatttgaaacgaccactcgcagggggatgccacttgatctgttgcggtt |
115 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||| || ||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| |
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|
| T |
28860533 |
atgccaacaccggtgcggttatgggggatagaaaaagccacgacaacgttacatttcaaacgaccactcgcagggggctgccatttgatctgttgcggtt |
28860434 |
T |
|
| Q |
116 |
caggagtagcagatgccccaagaacagtagctgaactgttcccagcagcagcctattgctgcagaccgtgtggtgcaggctgagttgcgggctgcatata |
215 |
Q |
| |
|
||| ||||||||||||| ||||||||| || |||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28860433 |
cagcagtagcagatgccgcaagaacagcagttgaactgttcacagcagcagcctgttgctgcagaccgtgtggtgcaggctgagttgtgggctgcatatc |
28860334 |
T |
|
| Q |
216 |
tggtcgcaaactgttagcgaactcccaatcatcctgcgtaactttagctctttcaattactgctgcacatcactccgtaacatccttcctaaccattaca |
315 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| || ||||||||| ||||||||| || || |||||| |||| |||||||||| || |||| ||| | |
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|
| T |
28860333 |
tgttcgcaaactgttagcgaactcccaatcatctagcataactttagatctttcaatcacagcggcacatgactctgtaacatcctcccaaacctttaaa |
28860234 |
T |
|
| Q |
316 |
ttacaccgtttccata |
331 |
Q |
| |
|
|||| |||||||||| |
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|
| T |
28860233 |
ttacggcgtttccata |
28860218 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 20 - 331
Target Start/End: Original strand, 17752666 - 17752965
Alignment:
| Q |
20 |
cagcaccggtgcggttgtgggggatagaaaaagccgcgtcaacgttacatttgaaacgaccactcgcagggggatgccacttgatctgttgcggttcagg |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
17752666 |
cagcaccggtgcggttatgggggatagaaaaagccgcgtcaacgttacatttcaaacgaccactcgcagggggctgccacttaatctgttgcggttcaga |
17752765 |
T |
|
| Q |
120 |
agtagcagatgccccaagaacagtagctgaactgttcccagcagcagcctattgctgcagaccgtgtggtgcaggctgagttgcgggctgcatatatggt |
219 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||| || | |
|
|
| T |
17752766 |
agtagcagatgccacaagaacagcagctgaactgttcacagcagcagcctgttgctgcagaccgtgtggtgca------------ggctgcatatctgtt |
17752853 |
T |
|
| Q |
220 |
cgcaaactgttagcgaactcccaatcatcctgcgtaactttagctctttcaattactgctgcacatcactccgtaacatccttcctaaccattacattac |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||| ||||||||| || ||||||||| ||||||||||||||| || |||| ||| ||||| |
|
|
| T |
17752854 |
cgcaaactgttagcgaactcccaatcatccagcataactttagttctttcaatcacagctgcacatgactccgtaacatcctcccaaacctttaaattac |
17752953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 22736862 - 22737159
Alignment:
| Q |
16 |
atgccagcaccggtgcggttgtgggggatagaaaaagccgcgtcaacgttacatttgaaacgaccactcgcagggggatgccacttgatctgttgcggtt |
115 |
Q |
| |
|
|||||| ||||| ||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| ||| |
|
|
| T |
22736862 |
atgccaacaccgatgcggttatgggggatagaaaaagtcgcgtcaacgttacatttcaaacgaccactcgcagggggctgccatttgatctgttgcagtt |
22736961 |
T |
|
| Q |
116 |
caggagtagcagatgccccaagaacagtagctgaactgttcccagcagcagcctattgctgcagaccgtgtggtgcaggctgagttgcgggctgcatata |
215 |
Q |
| |
|
||| ||||| ||||||| ||||||||| | ||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22736962 |
cagcagtagtagatgccgcaagaacagcaactgaactgttcacagcagcagcctgttgctgcagacc----ggtgcaggctgagttgcgggctgcatatc |
22737057 |
T |
|
| Q |
216 |
tggtcgcaaactgttagcgaactcccaatcatcctgcgtaactttagctctttcaattactgctgcacatcactccgtaacatccttcctaaccattaca |
315 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| || ||||||||||||||||||| || |||| ||| ||||||||||||||| || |||| ||| | |
|
|
| T |
22737058 |
tgttcgcaaactgttagcgaactcccaatcatctagcataactttagctctttcaatcacagctg--catgactccgtaacatcctcccaaacctttaaa |
22737155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 23 - 197
Target Start/End: Original strand, 28942630 - 28942804
Alignment:
| Q |
23 |
caccggtgcggttgtgggggatagaaaaagccgcgtcaacgttacatttgaaacgaccactcgcagggggatgccacttgatctgttgcggttcaggagt |
122 |
Q |
| |
|
|||||||||| || ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| | | |
|
|
| T |
28942630 |
caccggtgcgattatgggggatagaaaaagctgcatcaacgttacatttgaatcgaccactcgcagggggctgccacttgatctgatgcggttcagcaat |
28942729 |
T |
|
| Q |
123 |
agcagatgccccaagaacagtagctgaactgttcccagcagcagcctattgctgcagaccgtgtggtgcaggctg |
197 |
Q |
| |
|
| | ||||| || ||||| ||||||||||| |||||||| || ||||| ||||||||||||||||||||| |
|
|
| T |
28942730 |
aactgatgctgcaggaacataagctgaactgtcatcagcagcaaactgttgcttcagaccgtgtggtgcaggctg |
28942804 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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