View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0780_low_3 (Length: 568)
Name: NF0780_low_3
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 87 - 556
Target Start/End: Complemental strand, 37931738 - 37931269
Alignment:
| Q |
87 |
gagggcatggtctttatcatcactttcatgtttagtaagcatatattgtccgatggttcttctttttagtatctgtcagcatcagcagtagggttaaact |
186 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37931738 |
gagggcgtggtctttatcatcactttcatgtttagtaagcatatattgtctgatggttcttctttttcgtatctgtcagcatcagcagtagggttaaact |
37931639 |
T |
|
| Q |
187 |
caaaagtgtaatattctccaatctcgtaaccccctgcaatttttgacggctccataccacgcgacagtattgctactttatctttatctttaaagttacc |
286 |
Q |
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| T |
37931638 |
caaaagtgtaatattctccaatctcgtaaccccctgcattttttgacggctccataccacgcgacagtattgctactttatctttatctttaaagttacc |
37931539 |
T |
|
| Q |
287 |
tattgcttcccagtcccagaatccatcaaaatgcgaacaactgtatgattgaaccacatcagttctacaacttattaaaagcatttcaaggttgcgacaa |
386 |
Q |
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| T |
37931538 |
tattgcttcccagtcccagaatccatcaaaatgcgaacaactgtatgattgaaccacatcagttctacaacttattaaaagcatttcaaggttgcgacaa |
37931439 |
T |
|
| Q |
387 |
ccatggagaacaactaatccagaagatgttgatagaatgttactaggaagacttacactcctaagctcgacacaaccatttaaacataaacaactaagat |
486 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37931438 |
ccatagagaacaactaatccagaagatgttgatagaatgttactaggaagacttacactcctaagctcgacacaaccatttaaacataaacaactaagat |
37931339 |
T |
|
| Q |
487 |
tgcttaggaagcccgaggagtaaacttgcagcaactttacaaaataactaagaattattccttcaatatt |
556 |
Q |
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| T |
37931338 |
tgcttaggaagcccgaggagtaaacttgcagcaactttacaaaataactaagaattatttcttcaatatt |
37931269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 331 - 409
Target Start/End: Original strand, 37952216 - 37952294
Alignment:
| Q |
331 |
atgattgaaccacatcagttctacaacttattaaaagcatttcaaggttgcgacaaccatggagaacaactaatccaga |
409 |
Q |
| |
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||||||||||||| ||||||||| || ||||||||| ||||||| ||||||||||||||||| ||||||||||||| |
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| T |
37952216 |
atgattgaaccacgccagttctactgctgattaaaagcgtttcaagattgcgacaaccatggagtgcaactaatccaga |
37952294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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