View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0780_low_31 (Length: 327)
Name: NF0780_low_31
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 109 - 297
Target Start/End: Original strand, 38058276 - 38058467
Alignment:
| Q |
109 |
cactgccaatggttattttgctcacaatataagtaatctcat---atgggtaatctacagttgatgaatgctttgtagtgaatactttatacgctgccca |
205 |
Q |
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| T |
38058276 |
cactgcccatggttatttggctaacaatatgggtaatctcatctcatgggtaatcttcagttgatgaatgctttgtagtgaatactttacacactgccca |
38058375 |
T |
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| Q |
206 |
tggttaatttaacacgttagataggtgatggatgataagattacccatatgagaaaaaacgagagctttgtagtgagtttgtagtgagtact |
297 |
Q |
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| T |
38058376 |
tggttaatttaacacgttagataggtgatggatgataagattacccatatgagaaaaaacgagggctttgttgtgagtttgtagtgaatact |
38058467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 200 - 297
Target Start/End: Original strand, 35942630 - 35942727
Alignment:
| Q |
200 |
tgcccatggttaatttaacacgttagataggtgatggatgataagattacccatatgagaaaaaacgagagctttgtagtgagtttgtagtgagtact |
297 |
Q |
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| T |
35942630 |
tgcccatggttaatttatcacgttagataggtgatggatgataagattacccatatgagaaaaaacgagagctttgtagtgagtttgtagtgaatact |
35942727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 35942555 - 35942625
Alignment:
| Q |
38 |
cattctcttcctcttccccttttccttgcttctccaataactgagtgggtttaatcc-aaaatcaaggaac |
107 |
Q |
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| T |
35942555 |
cattctcttcctcttccccttttctttgcttctccaataactgagtgggtttaatccaaaaatcaaggaac |
35942625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 49697400 - 49697359
Alignment:
| Q |
38 |
cattctcttcctcttccccttttccttgcttctccaataact |
79 |
Q |
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| T |
49697400 |
cattctcttcctcttccccttttccttgcttctccaataact |
49697359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 27814503 - 27814454
Alignment:
| Q |
228 |
aggtgatggatgataagattacccatatgagaaaaaacgagagctttgtag |
278 |
Q |
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| T |
27814503 |
aggtgatggataataagattacccatatgagaaaaaac-agagctttgtag |
27814454 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 20196169 - 20196221
Alignment:
| Q |
228 |
aggtgatggatgataagattacccatatgagaaaaaacgagagctttgtagtga |
281 |
Q |
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| T |
20196169 |
aggtgaaggataataagattacccatatgagaaaaaa-gagagctttgtagtga |
20196221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 4224436 - 4224401
Alignment:
| Q |
6 |
ctccaacaaaatcacccctaacccataaacatcatt |
41 |
Q |
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| T |
4224436 |
ctccaacaaaatcacccctaacccataaacatcatt |
4224401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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