View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0780_low_38 (Length: 317)

Name: NF0780_low_38
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0780_low_38
NF0780_low_38
[»] chr2 (7 HSPs)
chr2 (1-231)||(12101094-12101324)
chr2 (8-231)||(5114944-5115167)
chr2 (44-186)||(20380939-20381081)
chr2 (44-152)||(25976605-25976713)
chr2 (69-138)||(15702107-15702176)
chr2 (52-138)||(21152356-21152442)
chr2 (69-134)||(15717417-15717482)
[»] chr1 (6 HSPs)
chr1 (2-231)||(11780869-11781098)
chr1 (8-176)||(13311063-13311231)
chr1 (8-231)||(10425316-10425539)
chr1 (29-231)||(1625549-1625751)
chr1 (44-123)||(30730687-30730766)
chr1 (42-176)||(21805376-21805510)
[»] chr3 (6 HSPs)
chr3 (6-231)||(19829686-19829911)
chr3 (8-231)||(16313265-16313488)
chr3 (8-231)||(18494259-18494482)
chr3 (47-231)||(14679722-14679906)
chr3 (42-165)||(3582226-3582349)
chr3 (77-125)||(20971973-20972021)
[»] chr5 (7 HSPs)
chr5 (5-231)||(19070131-19070357)
chr5 (5-231)||(5782649-5782875)
chr5 (8-152)||(11722491-11722635)
chr5 (2-231)||(17763268-17763497)
chr5 (1-152)||(21899689-21899840)
chr5 (69-125)||(35340140-35340196)
chr5 (42-138)||(13644474-13644570)
[»] chr4 (13 HSPs)
chr4 (5-231)||(33042085-33042311)
chr4 (8-152)||(8668628-8668772)
chr4 (8-152)||(10674767-10674911)
chr4 (8-152)||(10888407-10888551)
chr4 (8-94)||(10697303-10697389)
chr4 (8-94)||(10911072-10911158)
chr4 (42-152)||(1930216-1930326)
chr4 (42-144)||(17939282-17939384)
chr4 (78-131)||(39915352-39915405)
chr4 (53-144)||(15443096-15443187)
chr4 (90-152)||(10693664-10693726)
chr4 (90-152)||(10907430-10907492)
chr4 (35-132)||(7188285-7188382)
[»] chr8 (5 HSPs)
chr8 (8-159)||(21591366-21591517)
chr8 (8-159)||(14411543-14411694)
chr8 (52-204)||(17458698-17458850)
chr8 (8-159)||(23600121-23600272)
chr8 (69-134)||(18694085-18694150)
[»] scaffold0363 (1 HSPs)
scaffold0363 (8-159)||(7017-7168)
[»] chr7 (2 HSPs)
chr7 (8-159)||(3729273-3729424)
chr7 (44-152)||(20942402-20942510)
[»] scaffold0125 (2 HSPs)
scaffold0125 (47-231)||(31321-31505)
scaffold0125 (47-231)||(40632-40816)
[»] scaffold0093 (1 HSPs)
scaffold0093 (42-152)||(10363-10473)
[»] chr6 (5 HSPs)
chr6 (5-187)||(11776975-11777164)
chr6 (21-125)||(13734685-13734789)
chr6 (43-125)||(18308363-18308445)
chr6 (69-125)||(33312633-33312689)
chr6 (44-132)||(3548447-3548535)
[»] scaffold0061 (1 HSPs)
scaffold0061 (44-124)||(38063-38143)
[»] scaffold0017 (1 HSPs)
scaffold0017 (44-124)||(160636-160716)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-152)||(61325-61476)
[»] scaffold0490 (1 HSPs)
scaffold0490 (47-152)||(12071-12176)
[»] scaffold0292 (1 HSPs)
scaffold0292 (44-125)||(19448-19529)
[»] scaffold0062 (3 HSPs)
scaffold0062 (69-138)||(51019-51088)
scaffold0062 (69-138)||(63558-63627)
scaffold0062 (69-134)||(65975-66040)
[»] scaffold0238 (1 HSPs)
scaffold0238 (78-165)||(1469-1556)
[»] scaffold0416 (1 HSPs)
scaffold0416 (42-125)||(9234-9317)
[»] scaffold0063 (1 HSPs)
scaffold0063 (8-65)||(59562-59619)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 12101094 - 12101324
Alignment:
Q  1 ctctcagtggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggag 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12101094 ctctcagtggaccaaagatgtcaaatatcttgctcagaagcagactcatttatcgctttggattcgactggttgagttaccgcaagagtattggcgggag 12101193  T
Q  101 agaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaaccacacttttgtccactatgcacagatcctagttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  12101194 agaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatgcactgacaagaaaccacacttttggccactatgcacggatcctagttg 12101293  T
Q  201 acattgacctgtctaagagagcttatgatga 231  Q
    |||||||||||||||||||||||||||||||    
T  12101294 acattgacctgtctaagagagcttatgatga 12101324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 5114944 - 5115167
Alignment:
Q  8 tggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacat 107  Q
    |||||||| ||| |||||||||| ||||||||  ||||||||||||| ||||||||||   |||| ||||||||||| ||||||||| |||||||||| |    
T  5114944 tggaccaaggatttcaaatatctggctcagaaacagactcatgtatctctttggattcgcttggtggagttaccgcaggagtattggtgggagagaacct 5115043  T
Q  108 tgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaaccacacttttgtccactatgcacagatcctagttgacattga 207  Q
    |||| ||||| ||||||| |||||| |||||||| ||||| |||| ||||||| ||||||  |||||||  || |||||    || || || ||||||||    
T  5115044 tgaaggaaattgcaagtgcggttggtactccgattgacatagatggaccgacacgaaaccgtacttttggacattatgctagaattcttgtcgacattga 5115143  T
Q  208 cctgtctaagagagcttatgatga 231  Q
     || ||||||||||||||||||||    
T  5115144 tctttctaagagagcttatgatga 5115167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 186
Target Start/End: Original strand, 20380939 - 20381081
Alignment:
Q  44 actcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatag 143  Q
    |||||||| |||||||||||||   |||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||   ||||||| || ||||    
T  20380939 actcatgtttcgctttggattcgtttggtggagttaccgcaagagtattggcgggagcgaacattgaaggaaatagcaagtgcatttggcacccctatag 20381038  T
Q  144 acattgatgcaccgacaagaaaccacacttttgtccactatgc 186  Q
    | || || |  || ||  |||||||||||||||  ||||||||    
T  20381039 atatcgacgagccaactcgaaaccacacttttggtcactatgc 20381081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 152
Target Start/End: Complemental strand, 25976713 - 25976605
Alignment:
Q  44 actcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatag 143  Q
    |||||||| |||||||||||||   |||| ||||||||||||||||||||||||||  |||| ||||| |||||||| ||||  || ||||| || || |    
T  25976713 actcatgtttcgctttggattcgcttggtggagttaccgcaagagtattggcgggaacgaaccttgaaggaaatagctagtgccgtgggcacgcctattg 25976614  T
Q  144 acattgatg 152  Q
    |||||||||    
T  25976613 acattgatg 25976605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 15702107 - 15702176
Alignment:
Q  69 tggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactcc 138  Q
    |||||||||||||||| |||||||||||||| ||||| ||||| ||||| | ||||| ||||||||||||    
T  15702107 tggttgagttaccgcatgagtattggcgggaaagaactttgaaagaaattgaaagtgcggttggcactcc 15702176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 21152356 - 21152442
Alignment:
Q  52 atcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactcc 138  Q
    ||||||||||| ||   |||||||||||| ||| |||||||||||||| ||||| ||||| ||||| | ||||| ||||||||||||    
T  21152356 atcgctttggactcgtttggttgagttactgcatgagtattggcgggaaagaactttgaaagaaattgaaagtgaggttggcactcc 21152442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 15717417 - 15717482
Alignment:
Q  69 tggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggca 134  Q
    |||||||||||||||| |||||||| ||||| ||||| ||||| ||||| | ||||| ||||||||    
T  15717417 tggttgagttaccgcatgagtattgacgggaaagaactttgaaagaaattgaaagtgcggttggca 15717482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 11781098 - 11780869
Alignment:
Q  2 tctcagtggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggaga 101  Q
    ||||| |||||||||||| |||||||||||||| ||||| |||||||||||| ||||||||||| ||||||||| |||||||||||||||||| ||||||    
T  11781098 tctcaatggaccaaagatttcaaatatcttgcttagaagcagactcatgtattgctttggattcgactggttgaattaccgcaagagtattggtgggaga 11780999  T
Q  102 gaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaaccacacttttgtccactatgcacagatcctagttga 201  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| |||||||||||  |||||||||||    
T  11780998 gaacattgaaggaaatagcaagtgtggttggcactccgatagacattgatggaccgacatgaaaccgcacttttggccactatgcacgaatcctagttga 11780899  T
Q  202 cattgacctgtctaagagagcttatgatga 231  Q
    | ||||||| || ||||||||||| |||||    
T  11780898 ccttgacctatcaaagagagcttacgatga 11780869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 13311231 - 13311063
Alignment:
Q  8 tggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacat 107  Q
    |||||||||| | |||||||||| ||||||||  | ||||||||||| ||||||||||   |||| ||||||||||| |||||||||||||||||||| |    
T  13311231 tggaccaaagctttcaaatatctagctcagaaacaaactcatgtatctctttggattcgcttggtggagttaccgcatgagtattggcgggagagaacct 13311132  T
Q  108 tgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaaccacacttttg 176  Q
    |||| ||||| ||||||| |||||| |||| ||| |||||  ||| ||||||| ||||||  |||||||    
T  13311131 tgaaggaaattgcaagtgcggttggtactctgattgacataaatggaccgacacgaaaccgtacttttg 13311063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 10425539 - 10425316
Alignment:
Q  8 tggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacat 107  Q
    |||||||||||| |||||||||| ||||| ||  | |||||||||||  | |||||||   |||| |||||||||||  |||||| || ||||||||| |    
T  10425539 tggaccaaagatttcaaatatctggctcaaaaacatactcatgtatctttatggattcgcttggtggagttaccgcagaagtatttgcaggagagaacct 10425440  T
Q  108 tgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaaccacacttttgtccactatgcacagatcctagttgacattga 207  Q
    |||| ||||| ||||||| |||||| |||||||| ||||| |||| ||||||| ||||||  || ||||  |||||||||   ||  |||| ||||||||    
T  10425439 tgaaggaaattgcaagtgcggttggtactccgatcgacatagatggaccgacacgaaaccgtacctttggtcactatgcaagaattttagtcgacattga 10425340  T
Q  208 cctgtctaagagagcttatgatga 231  Q
     || ||||||||||||||||||||    
T  10425339 tctttctaagagagcttatgatga 10425316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 231
Target Start/End: Complemental strand, 1625751 - 1625549
Alignment:
Q  29 cttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtgg 128  Q
    |||||||||||  |||| ||||  || || ||||||| | | || ||||||||||| || ||||||| ||||||||  ||||| ||||||||||||||||    
T  1625751 cttgctcagaaacagacccatgcttcactctggattcgattcgtagagttaccgcaggaatattggcaggagagaattttgaaggaaatagcaagtgtgg 1625652  T
Q  129 ttggcactccgatagacattgatgcaccgacaagaaaccacacttttgtccactatgcacagatcctagttgacattgacctgtctaagagagcttatga 228  Q
    | || || ||||| |||||||||| ||||||| ||||||  || |||| ||| || |||   ||  ||||| ||||||| || || ||||||||||||||    
T  1625651 tgggtaccccgattgacattgatggaccgacacgaaaccgtacctttggccattacgcaagaattttagttaacattgatctttcaaagagagcttatga 1625552  T
Q  229 tga 231  Q
    |||    
T  1625551 tga 1625549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 30730687 - 30730766
Alignment:
Q  44 actcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaag 123  Q
    |||||||| |||||||||||||   |||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||    
T  30730687 actcatgtttcgctttggattcgtttggtggagttaccgcaagagtattggcgggagagaaccttgaaggaaattgcaag 30730766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 176
Target Start/End: Original strand, 21805376 - 21805510
Alignment:
Q  42 agactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgat 141  Q
    |||| ||||||||| ||||||| |   |||| ||| |||| ||||||||||| ||||||||||| ||||| ||||| || |||| |||||| ||||| ||    
T  21805376 agacacatgtatcgatttggatacgtttggtggagctaccacaagagtattgacgggagagaacgttgaaggaaattgctagtgcggttgggactccaat 21805475  T
Q  142 agacattgatgcaccgacaagaaaccacacttttg 176  Q
     || ||||||| ||| || |||||||  |||||||    
T  21805476 tgatattgatggaccaactagaaaccgtacttttg 21805510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 6 - 231
Target Start/End: Complemental strand, 19829911 - 19829686
Alignment:
Q  6 agtggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaac 105  Q
    |||||||||||||| ||||||| ||| |||||||  || | |||||||| ||||||||||   |||||||||||||||| ||||||||||||||||||||    
T  19829911 agtggaccaaagatttcaaatacctttctcagaaacaggcacatgtatcactttggattcgcttggttgagttaccgcaggagtattggcgggagagaac 19829812  T
Q  106 attgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaaccacacttttgtccactatgcacagatcctagttgacatt 205  Q
     ||||| || || |||||   ||||||||| ||||| |||||||||| ||||||| |||||||||||||||  |||||||||   ||  |||||||||||    
T  19829811 tttgaaggagatcgcaagcacggttggcaccccgattgacattgatggaccgacacgaaaccacacttttgggcactatgcaagaattttagttgacatt 19829712  T
Q  206 gacctgtctaagagagcttatgatga 231  Q
    || || || |||||||| ||||||||    
T  19829711 gatctttcaaagagagcatatgatga 19829686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 16313265 - 16313488
Alignment:
Q  8 tggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacat 107  Q
    |||| ||| ||| |||||||||| ||||||||  ||||||||||||  |||||||||    |||| ||||||||||| |||||||||||||||||||| |    
T  16313265 tggatcaaggatttcaaatatctggctcagaaacagactcatgtatatctttggatttgcttggtggagttaccgcaggagtattggcgggagagaacct 16313364  T
Q  108 tgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaaccacacttttgtccactatgcacagatcctagttgacattga 207  Q
    |||| ||||| ||||||| |||||| ||||||||  |||| ||||  |||||| ||||||  || ||||  ||||||| |   ||  |||| ||||||||    
T  16313365 tgaaggaaattgcaagtgcggttggtactccgattaacatagatgggccgacacgaaaccgtacctttggtcactatgtaagaattttagtcgacattga 16313464  T
Q  208 cctgtctaagagagcttatgatga 231  Q
     || ||||||||||||||||||||    
T  16313465 tctttctaagagagcttatgatga 16313488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 18494259 - 18494482
Alignment:
Q  8 tggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacat 107  Q
    |||| ||| ||| |||||||||| ||||||||  ||||||||||||  |||||||||    |||| ||||||||||| |||||||||||||||||||| |    
T  18494259 tggatcaaggatttcaaatatctggctcagaaacagactcatgtatatctttggatttgcttggtggagttaccgcaggagtattggcgggagagaacct 18494358  T
Q  108 tgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaaccacacttttgtccactatgcacagatcctagttgacattga 207  Q
    |||| ||||| ||||||| |||||| ||||||||  |||| ||||  |||||| ||||||  || ||||  ||||||| |   ||  |||| ||||||||    
T  18494359 tgaaggaaattgcaagtgcggttggtactccgattaacatagatgggccgacacgaaaccgtacctttggtcactatgtaagaattttagtcgacattga 18494458  T
Q  208 cctgtctaagagagcttatgatga 231  Q
     || ||||||||||||||||||||    
T  18494459 tctttctaagagagcttatgatga 18494482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 231
Target Start/End: Complemental strand, 14679906 - 14679722
Alignment:
Q  47 catgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagaca 146  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||||  | |||||||| ||||| |||| ||  |||||||| || ||||| |    
T  14679906 catgtatcgctttggattcgtttggttgagttaccgcaagagtattggcgggaacgtacattgaaggaaattgcaattgccgttggcacacctatagata 14679807  T
Q  147 ttgatgcaccgacaagaaaccacacttttgtccactatgcacagatcctagttgacattgacctgtctaagagagcttatgatga 231  Q
    ||||||  || ||  | ||||  |||||||  |||||||| |  |||||||| || ||||| || || |||| ||||||||||||    
T  14679806 ttgatgggccaactcgcaaccgtacttttggtcactatgctcgcatcctagtggatattgatctttcaaagaaagcttatgatga 14679722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 165
Target Start/End: Complemental strand, 3582349 - 3582226
Alignment:
Q  42 agactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgat 141  Q
    ||||||||||||| |||||||| |   |||| ||  ||||||||||||||||||||||||| || ||||| ||||| | ||||| |||||| || || ||    
T  3582349 agactcatgtatcactttggatacgtttggtagaactaccgcaagagtattggcgggagaggaccttgaaggaaattgaaagtgcggttggaacacctat 3582250  T
Q  142 agacattgatgcaccgacaagaaa 165  Q
     || ||||||| ||| || |||||    
T  3582249 tgatattgatggaccaactagaaa 3582226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 20972021 - 20971973
Alignment:
Q  77 ttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtg 125  Q
    ||||||||||| |||||||||||||| || ||||| ||||| |||||||    
T  20972021 ttaccgcaagaatattggcgggagaggaccttgaaggaaattgcaagtg 20971973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 5 - 231
Target Start/End: Complemental strand, 19070357 - 19070131
Alignment:
Q  5 cagtggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaa 104  Q
    ||||||||||||||| ||||||| ||| |||||||  |||| |||||||| ||||||||||   |||||||||||| |||||||||||||||||||||||    
T  19070357 cagtggaccaaagatttcaaatacctttctcagaaacagacacatgtatctctttggattcgcttggttgagttactgcaagagtattggcgggagagaa 19070258  T
Q  105 cattgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaaccacacttttgtccactatgcacagatcctagttgacat 204  Q
    | ||||| || || ||||| | ||||||||| ||||| |||||||||| || |||| |||||| ||||||||  |||||||||   ||  ||||||||||    
T  19070257 ctttgaaggagatcgcaagcgcggttggcaccccgattgacattgatggactgacacgaaaccgcacttttgggcactatgcaataattttagttgacat 19070158  T
Q  205 tgacctgtctaagagagcttatgatga 231  Q
     || || || |||||||| ||||||||    
T  19070157 cgatctttcaaagagagcatatgatga 19070131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 5 - 231
Target Start/End: Complemental strand, 5782875 - 5782649
Alignment:
Q  5 cagtggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaa 104  Q
    ||||||||||||||| ||||||| |||  ||||||  |||| |||||||| |||||||||    | |||||||||||||| || ||||||||||||||||    
T  5782875 cagtggaccaaagatttcaaatacctttatcagaaacagacacatgtatctctttggatttgcttagttgagttaccgcaggaatattggcgggagagaa 5782776  T
Q  105 cattgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaaccacacttttgtccactatgcacagatcctagttgacat 204  Q
    | ||||| || || ||||| | |||||||| ||| || |||||||||| ||||||| |||||||||||||||  |||||||||   ||  ||||||||||    
T  5782775 ctttgaaggagatcgcaagcgcggttggcaatccaattgacattgatggaccgacacgaaaccacacttttgggcactatgcaagaattttagttgacat 5782676  T
Q  205 tgacctgtctaagagagcttatgatga 231  Q
    ||| || || |||||||| ||||||||    
T  5782675 tgatctttcaaagagagcatatgatga 5782649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 11722491 - 11722635
Alignment:
Q  8 tggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacat 107  Q
    |||||||||||  |||||||||||||||| ||  |||||||||| || |||||||||| | |||| |||||||||||||| ||||||||||||||||  |    
T  11722491 tggaccaaagacttcaaatatcttgctcaaaaacagactcatgtttcactttggattcgattggtggagttaccgcaagaatattggcgggagagaattt 11722590  T
Q  108 tgaatgaaatagcaagtgtggttggcactccgatagacattgatg 152  Q
    |||| ||||||||||||| ||| || || || || ||||||||||    
T  11722591 tgaaggaaatagcaagtgcggtaggtacaccaattgacattgatg 11722635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 231
Target Start/End: Original strand, 17763268 - 17763497
Alignment:
Q  2 tctcagtggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggaga 101  Q
    |||||||||| ||| ||  ||||||| ||| |||| ||| |||| ||||| || ||||||||||   |||||||||||||||| ||||||| | ||||||    
T  17763268 tctcagtggaacaacgacttcaaatacctttctcaaaagcagacacatgtttcactttggattcgcttggttgagttaccgcaggagtattagtgggaga 17763367  T
Q  102 gaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaaccacacttttgtccactatgcacagatcctagttga 201  Q
    |||||||||| ||||| |||||  ||||||| || || || ||||||||||  | ||||   ||||| |||||||  ||||||||||  ||  |||||||    
T  17763368 gaacattgaaggaaattgcaagcatggttggaacccctatcgacattgatggtctgacacagaaccatacttttgggcactatgcacgcattttagttga 17763467  T
Q  202 cattgacctgtctaagagagcttatgatga 231  Q
     |||||  | || |||||||| ||||||||    
T  17763468 tattgatttatcaaagagagcctatgatga 17763497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 21899840 - 21899689
Alignment:
Q  1 ctctcagtggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggag 100  Q
    |||||||||||| |||||| |||||||||   | |||||| |||| |||||||| |||||||| |   |||| ||| |||| |||||||||||| |||||    
T  21899840 ctctcagtggactaaagatttcaaatatcagacgcagaagcagacacatgtatcactttggatacgtttggtcgagctaccacaagagtattggagggag 21899741  T
Q  101 agaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatg 152  Q
    ||||  ||||| ||||| || |||| |||||| ||||| || || |||||||    
T  21899740 agaatgttgaaggaaattgctagtgcggttgggactccaattgatattgatg 21899689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 35340140 - 35340196
Alignment:
Q  69 tggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtg 125  Q
    |||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||    
T  35340140 tggtggagttaccgcaagagtattggcgggagagaaccttgaaggaaattgcaagtg 35340196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 13644570 - 13644474
Alignment:
Q  42 agactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactcc 138  Q
    |||||||||  |||||||||||||   |||| ||| |||| ||||||||||||||||||||||| ||||  ||||| |||||||  ||||| |||||    
T  13644570 agactcatgcttcgctttggattcgtttggtagagctaccacaagagtattggcgggagagaaccttgatggaaattgcaagtgcagttggtactcc 13644474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 231
Target Start/End: Complemental strand, 33042311 - 33042085
Alignment:
Q  5 cagtggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaa 104  Q
    |||||||| |||||| |||||||||  ||||||||  |||| |||| ||| ||||||||||   |||| ||||||||||| |||||||||||||||||||    
T  33042311 cagtggactaaagatttcaaatatcaggctcagaaacagacacatgcatctctttggattcgcttggtggagttaccgcaggagtattggcgggagagaa 33042212  T
Q  105 cattgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaaccacacttttgtccactatgcacagatcctagttgacat 204  Q
    | ||||| ||||| ||||||  |||||| |||||||| ||||| |||| ||||||| |||||   || ||||  |||||||||   ||  |||| |||||    
T  33042211 ccttgaaggaaatcgcaagtccggttggtactccgattgacatagatggaccgacacgaaactgtacctttggtcactatgcaagaattttagtcgacat 33042112  T
Q  205 tgacctgtctaagagagcttatgatga 231  Q
    ||| || ||||||||||||||||||||    
T  33042111 tgatctttctaagagagcttatgatga 33042085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 8668772 - 8668628
Alignment:
Q  8 tggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacat 107  Q
    |||||||||||| ||||||||| |||||||||  | || |||||||| ||||||||||   |||| ||||||||||| |||||||||||||||||||| |    
T  8668772 tggaccaaagatttcaaatatcatgctcagaaacaaacacatgtatctctttggattcgcttggtggagttaccgcaggagtattggcgggagagaactt 8668673  T
Q  108 tgaatgaaatagcaagtgtggttggcactccgatagacattgatg 152  Q
    |||| ||||| | ||||| |||||| |||||||| ||||| ||||    
T  8668672 tgaaggaaatcgtaagtgcggttggtactccgattgacatagatg 8668628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 10674767 - 10674911
Alignment:
Q  8 tggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacat 107  Q
    |||||||||||  |||||||||||||||| ||  | |||||||| || |||||||||| | | || |||||||||||||| ||||||||||||||||  |    
T  10674767 tggaccaaagacttcaaatatcttgctcaaaaacaaactcatgtttcactttggattcgattagtggagttaccgcaagaatattggcgggagagaattt 10674866  T
Q  108 tgaatgaaatagcaagtgtggttggcactccgatagacattgatg 152  Q
    |||| ||||||||||||| ||| || || ||||| ||||||||||    
T  10674867 tgaaggaaatagcaagtgcggtaggtacaccgattgacattgatg 10674911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 10888407 - 10888551
Alignment:
Q  8 tggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacat 107  Q
    |||||||||||  |||||||||||||||| ||  | |||||||| || |||||||||| | | || |||||||||||||| ||||||||||||||||  |    
T  10888407 tggaccaaagacttcaaatatcttgctcaaaaacaaactcatgtttcactttggattcgattagtggagttaccgcaagaatattggcgggagagaattt 10888506  T
Q  108 tgaatgaaatagcaagtgtggttggcactccgatagacattgatg 152  Q
    |||| ||||||||||||| ||| || || ||||| ||||||||||    
T  10888507 tgaaggaaatagcaagtgcggtaggtacaccgattgacattgatg 10888551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 10697389 - 10697303
Alignment:
Q  8 tggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattgg 94  Q
    |||||||||||  |||||||||||||||| ||  | |||||||| || |||||||||| | ||||||||||||||||||| ||||||    
T  10697389 tggaccaaagacttcaaatatcttgctcaaaaacaaactcatgtttcactttggattcgattggttgagttaccgcaagaatattgg 10697303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 10911158 - 10911072
Alignment:
Q  8 tggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattgg 94  Q
    |||||||||||  |||||||||||||||| ||  | |||||||| || |||||||||| | ||||||||||||||||||| ||||||    
T  10911158 tggaccaaagacttcaaatatcttgctcaaaaacaaactcatgtttcactttggattcgattggttgagttaccgcaagaatattgg 10911072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 152
Target Start/End: Complemental strand, 1930326 - 1930216
Alignment:
Q  42 agactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgat 141  Q
    |||| ||||||||| ||||||| |   |||| ||| |||| ||||||||||||||||||||||| ||||| ||||| || || | |||||| ||||| ||    
T  1930326 agacacatgtatcgatttggatacgtttggtggagctaccacaagagtattggcgggagagaacgttgaaggaaattgctagcgcggttgggactccaat 1930227  T
Q  142 agacattgatg 152  Q
     || |||||||    
T  1930226 tgatattgatg 1930216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 17939282 - 17939384
Alignment:
Q  42 agactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgat 141  Q
    |||||||||  |||||||||||||   |||| ||| |||| |||||||||||||||||||||||  |||  ||||| |||||||  ||||| ||||| ||    
T  17939282 agactcatgcttcgctttggattcgtttggtggagctaccacaagagtattggcgggagagaaccctgatggaaattgcaagtgcagttggtactcctat 17939381  T
Q  142 aga 144  Q
    |||    
T  17939382 aga 17939384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 39915405 - 39915352
Alignment:
Q  78 taccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttg 131  Q
    ||||||||||||||||||||||||| || ||||| ||||| ||||||| |||||    
T  39915405 taccgcaagagtattggcgggagaggaccttgaaagaaattgcaagtgcggttg 39915352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 144
Target Start/End: Complemental strand, 15443187 - 15443096
Alignment:
Q  53 tcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgataga 144  Q
    |||||||||||||   |||| ||| |||| |||||||||||||||||||||||  |||  ||||| |||||||  ||||| ||||| |||||    
T  15443187 tcgctttggattcttttggtggagctaccacaagagtattggcgggagagaaccctgatggaaattgcaagtgcagttggtactcctataga 15443096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 10693726 - 10693664
Alignment:
Q  90 attggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatg 152  Q
    |||||||||||||||  ||||| ||||||||||||| ||| || || ||||| ||||||||||    
T  10693726 attggcgggagagaattttgaaggaaatagcaagtgcggtaggtacaccgattgacattgatg 10693664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 10907492 - 10907430
Alignment:
Q  90 attggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatg 152  Q
    |||||||||||||||  ||||| ||||||||||||| ||| || || ||||| ||||||||||    
T  10907492 attggcgggagagaattttgaaggaaatagcaagtgcggtaggtacaccgattgacattgatg 10907430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 7188285 - 7188382
Alignment:
Q  35 cagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttgg 132  Q
    |||||| |||||| |||||| |||||||| |   |||| ||  ||| |||||| |||||||||||||| || ||||| ||||| ||||||| ||||||    
T  7188285 cagaagcagactcgtgtatcactttggatacgtttggtagaactactgcaagaatattggcgggagaggaccttgaaggaaattgcaagtgcggttgg 7188382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 8 - 159
Target Start/End: Original strand, 21591366 - 21591517
Alignment:
Q  8 tggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacat 107  Q
    |||||||||||  |||||||||||||||||||  |||||||||| || |||||||||| | |||| |||||||||||||| |||||||||  |||||  |    
T  21591366 tggaccaaagacttcaaatatcttgctcagaaacagactcatgtttcactttggattcgattggtggagttaccgcaagaatattggcggttgagaattt 21591465  T
Q  108 tgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgac 159  Q
    |||| ||||||||||||||||| || || ||||| |||||||||| ||||||    
T  21591466 tgaaggaaatagcaagtgtggtaggtacaccgattgacattgatggaccgac 21591517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 159
Target Start/End: Original strand, 14411543 - 14411694
Alignment:
Q  8 tggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacat 107  Q
    |||||||||||  |||||||||||||||||||  |||||||||| || |||||||||| | |||| ||||||||||| || ||||||||||||||||  |    
T  14411543 tggaccaaagacttcaaatatcttgctcagaaacagactcatgtttcactttggattcgattggtggagttaccgcaggaatattggcgggagagaattt 14411642  T
Q  108 tgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgac 159  Q
    |||| ||||||||||| | ||| || || ||||| |||||||||| ||||||    
T  14411643 tgaaggaaatagcaagagcggtaggtacaccgattgacattgatggaccgac 14411694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 52 - 204
Target Start/End: Original strand, 17458698 - 17458850
Alignment:
Q  52 atcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgat 151  Q
    |||||||||||||||  |||||||||||||||| || ||||||| ||||||||| | ||| ||||| ||||| | ||||||||| ||||| |||||||||    
T  17458698 atcgctttggattcacttggttgagttaccgcaggaatattggcaggagagaacttcgaaggaaatcgcaagcgcggttggcaccccgattgacattgat 17458797  T
Q  152 gcaccgacaagaaaccacacttttgtccactatgcacagatcctagttgacat 204  Q
    | | | |||||||||  ||||||||  |||||||||  |||  ||||||||||    
T  17458798 ggatctacaagaaactgcacttttggtcactatgcaatgattttagttgacat 17458850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 159
Target Start/End: Original strand, 23600121 - 23600272
Alignment:
Q  8 tggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacat 107  Q
    |||||||||||  |||||||||||||||||||  | | |||||| || ||||||||||   |||| ||||||||||| || |||||| |||| ||||  |    
T  23600121 tggaccaaagacttcaaatatcttgctcagaaacaaaatcatgtttcactttggattcgtttggtggagttaccgcaggaatattggtgggaaagaattt 23600220  T
Q  108 tgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgac 159  Q
    || | ||||||||||||| | | || || ||||| || ||||||| ||||||    
T  23600221 tgtaagaaatagcaagtgcgataggtacaccgattgaaattgatggaccgac 23600272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 18694085 - 18694150
Alignment:
Q  69 tggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggca 134  Q
    |||||||||||||||| |||||||||||||| ||||| ||||| ||||| | ||||| ||||||||    
T  18694085 tggttgagttaccgcatgagtattggcgggaaagaactttgaaagaaattgaaagtgcggttggca 18694150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 7168 - 7017
Alignment:
Q  8 tggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacat 107  Q
    |||||||||||  |||||||||||||||||||  |||||||||| || |||||||||| | |||| ||||||||||| || ||||||||||||||||  |    
T  7168 tggaccaaagacttcaaatatcttgctcagaaacagactcatgtttcactttggattcgattggtggagttaccgcaggaatattggcgggagagaattt 7069  T
Q  108 tgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgac 159  Q
    |||| ||||||||||| | ||| || || ||||| |||||||||| ||||||    
T  7068 tgaaggaaatagcaagcgcggtaggtacaccgattgacattgatggaccgac 7017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 3729424 - 3729273
Alignment:
Q  8 tggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacat 107  Q
    |||||||||||  |||||||||||||||||||  |||||||||| || |||||||||| | |||| |||||||||||||| ||||||||||||||||  |    
T  3729424 tggaccaaagacttcaaatatcttgctcagaaatagactcatgtttcactttggattcgattggtggagttaccgcaagaatattggcgggagagaattt 3729325  T
Q  108 tgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgac 159  Q
    |||| |||||| ||||||  || || || ||||| |||||||||| ||||||    
T  3729324 tgaaggaaataacaagtgcagtaggtacaccgattgacattgatggaccgac 3729273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 152
Target Start/End: Complemental strand, 20942510 - 20942402
Alignment:
Q  44 actcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatag 143  Q
    |||||||| |||||||||||||   |||| ||||||||||||||||||||||||||  | || ||||| |||||||| ||||  || ||||| || || |    
T  20942510 actcatgtttcgctttggattcgcttggtggagttaccgcaagagtattggcgggaacgtaccttgaaggaaatagctagtgccgtgggcacgcctattg 20942411  T
Q  144 acattgatg 152  Q
    |||||||||    
T  20942410 acattgatg 20942402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 47 - 231
Target Start/End: Complemental strand, 31505 - 31321
Alignment:
Q  47 catgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagaca 146  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||||  | |||||||| ||||| |||||||  |||||||| || ||||| |    
T  31505 catgtatcgctttggattcgtttggttgagttaccgcaagagtattggcgggaatgtacattgaaggaaattgcaagtgccgttggcacacctatagata 31406  T
Q  147 ttgatgcaccgacaagaaaccacacttttgtccactatgcacagatcctagttgacattgacctgtctaagagagcttatgatga 231  Q
    ||||||  || ||  ||||||  | |||||  |||||||| |  |||||||| || ||||| || || |||| ||||||||||||    
T  31405 ttgatgggccaactcgaaaccgtaattttggtcactatgctcgcatcctagtggatattgatctttcgaagaaagcttatgatga 31321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 47 - 231
Target Start/End: Complemental strand, 40816 - 40632
Alignment:
Q  47 catgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagaca 146  Q
    |||||||||||||||||||   ||||| |||||||||||||||||||||||||  | |||| ||| ||||| |||||||  |||||||| || ||||| |    
T  40816 catgtatcgctttggattcgtttggttcagttaccgcaagagtattggcgggaatgtacatagaaggaaattgcaagtgccgttggcacacctatagata 40717  T
Q  147 ttgatgcaccgacaagaaaccacacttttgtccactatgcacagatcctagttgacattgacctgtctaagagagcttatgatga 231  Q
    ||||||  || ||  ||||||  |||||||  |||||||| |  |||||||| || ||||| || |  |||| ||||||||||||    
T  40716 ttgatgggccaactcgaaaccgtacttttggtcactatgctcgcatcctagtggatattgatcttttgaagaaagcttatgatga 40632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 152
Target Start/End: Original strand, 10363 - 10473
Alignment:
Q  42 agactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgat 141  Q
    |||| ||||||||||||||||| ||  |||| |||||||| ||||||||||||||||||||||| ||||| ||||| ||||||| |||||| ||||| ||    
T  10363 agacacatgtatcgctttggatacatttggtggagttaccacaagagtattggcgggagagaacgttgaaagaaattgcaagtgcggttgggactccaat 10462  T
Q  142 agacattgatg 152  Q
     || |||||||    
T  10463 tgatattgatg 10473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 5 - 187
Target Start/End: Complemental strand, 11777164 - 11776975
Alignment:
Q  5 cagtggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaa 104  Q
    ||||||||||||||| ||||||| ||| |||| ||  |||| ||||||||||||||||||    |  |||||||||||||||||||||||||||||||||    
T  11777164 cagtggaccaaagatttcaaatacctttctcataac-agacacatgtatcgctttggattttttttattgagttaccgcaagagtattggcgggagagaa 11777066  T
Q  105 cattgaatgaaatagcaagtgtggttggca--------ctccgatagacattgatgcaccgacaagaaaccacacttttgtccactatgca 187  Q
    | ||||| || ||  |||||| ||||||||        | || || |||||||||| ||||||| |||||||||||||||  |||||||||    
T  11777065 ccttgaaggagatcacaagtgcggttggcaccccaaatccccaattgacattgatggaccgacacgaaaccacacttttgggcactatgca 11776975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 13734685 - 13734789
Alignment:
Q  21 tcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagc 120  Q
    |||||||||||||||||||  |||||||||| || |||||||||| | |||| ||| |||| || || |||||||| |||||||  ||||| ||||||||    
T  13734685 tcaaatatcttgctcagaaacagactcatgtttcactttggattcgattggtggaggtaccacaggaatattggcgagagagaattttgaaggaaatagc 13734784  T
Q  121 aagtg 125  Q
    |||||    
T  13734785 aagtg 13734789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 18308445 - 18308363
Alignment:
Q  43 gactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtg 125  Q
    ||||||||| ||| ||||||| |   |||| ||||||||||||||||||||| |||||||||| ||||| ||||| |||||||    
T  18308445 gactcatgtctcgatttggatacgtttggtggagttaccgcaagagtattggtgggagagaaccttgaaggaaattgcaagtg 18308363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 33312633 - 33312689
Alignment:
Q  69 tggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtg 125  Q
    |||| |||||||| ||||||||||||||||||||||| ||||| ||||| |||||||    
T  33312633 tggtggagttaccacaagagtattggcgggagagaaccttgaaggaaattgcaagtg 33312689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 3548535 - 3548447
Alignment:
Q  44 actcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttgg 132  Q
    ||||||||||| |||||||| |   |||| ||  |||||||| |||||||||||||||| || ||||| ||||| ||||||| ||||||    
T  3548535 actcatgtatcactttggatacgtttggtagaactaccgcaaaagtattggcgggagaggaccttgaaggaaattgcaagtgcggttgg 3548447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 38063 - 38143
Alignment:
Q  44 actcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagt 124  Q
    |||||||| |||||||||||||   |||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  38063 actcatgtttcgctttggattcgtttggtggagttaccgcaagagtattggcgggagcgaacattgaaggaaatagcaagt 38143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 160716 - 160636
Alignment:
Q  44 actcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagt 124  Q
    |||||||| |||||||||||||   |||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  160716 actcatgtttcgctttggattcgtttggtggagttaccgcaagagtattggcgggagcgaacattgaaggaaatagcaagt 160636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 61476 - 61325
Alignment:
Q  1 ctctcagtggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggag 100  Q
    |||||||||||| || ||| |||| ||||   | || ||| |||| ||||||||||||||||| |   |||| |||||||| ||||||||||||||||||    
T  61476 ctctcagtggactaaggatttcaagtatcagacacaaaagcagacacatgtatcgctttggatacgtttggtggagttaccacaagagtattggcgggag 61377  T
Q  101 agaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatg 152  Q
    ||||| ||||| ||||| ||||||| |||||| ||||| || || |||||||    
T  61376 agaacgttgaaagaaattgcaagtgcggttgggactccaattgatattgatg 61325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 152
Target Start/End: Original strand, 12071 - 12176
Alignment:
Q  47 catgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagaca 146  Q
    ||||||||| |||||||||   |||||||||||||||||||||||||||||||| | |||||||| ||||| |||||||  || ||||| || ||||| |    
T  12071 catgtatcgttttggattcgtttggttgagttaccgcaagagtattggcgggagcgtacattgaaggaaattgcaagtgccgtaggcacgcctatagata 12170  T
Q  147 ttgatg 152  Q
    ||||||    
T  12171 ttgatg 12176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0292 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 19448 - 19529
Alignment:
Q  44 actcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtg 125  Q
    |||||||| |||||||||||||   |||| |||||||||||||| ||||||||||||||||| ||||| ||||| |||||||    
T  19448 actcatgtttcgctttggattcgcttggtggagttaccgcaagaatattggcgggagagaaccttgaaggaaattgcaagtg 19529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 51019 - 51088
Alignment:
Q  69 tggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactcc 138  Q
    |||||||||||||||| |||||||||||||| ||||| ||||| ||||| | ||||| ||||||||||||    
T  51019 tggttgagttaccgcatgagtattggcgggaaagaactttgaaagaaattgaaagtgcggttggcactcc 51088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 63558 - 63627
Alignment:
Q  69 tggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactcc 138  Q
    |||||||||||||||| |||||||||||||| ||||| ||||| ||||| | ||||| ||||||||||||    
T  63558 tggttgagttaccgcatgagtattggcgggaaagaactttgaaagaaattgaaagtgcggttggcactcc 63627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 65975 - 66040
Alignment:
Q  69 tggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggca 134  Q
    |||||||||||||||| |||||||| ||||| ||||| ||||| ||||| | ||||| ||||||||    
T  65975 tggttgagttaccgcatgagtattgacgggaaagaactttgaaagaaattgaaagtgcggttggca 66040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 165
Target Start/End: Complemental strand, 1556 - 1469
Alignment:
Q  78 taccgcaagagtattggcgggagagaacattgaatgaaatagcaagtgtggttggcactccgatagacattgatgcaccgacaagaaa 165  Q
    ||||||||||||||||||||||||| || ||||| ||||| ||||||| |||||| || ||||| || ||||||| ||| || |||||    
T  1556 taccgcaagagtattggcgggagaggaccttgaaggaaattgcaagtgcggttggaacaccgattgatattgatggaccaactagaaa 1469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0416 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 9234 - 9317
Alignment:
Q  42 agactcatgtatcgctttggattcaactggttgagttaccgcaagagtattggcgggagagaacattgaatgaaatagcaagtg 125  Q
    ||||||| || ||||||||||| |   || |||| |||||||||||||||||||||||||| || ||||| || ||||||||||    
T  9234 agactcacgtttcgctttggatacggttgattgaattaccgcaagagtattggcgggagaggactttgaaggagatagcaagtg 9317  T

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Target: scaffold0063 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 59562 - 59619
Alignment:
Q  8 tggaccaaagatgtcaaatatcttgctcagaaggagactcatgtatcgctttggattc 65  Q
    |||||||||||  |||||||||||||||| ||  |||||||||| || ||||||||||    
T  59562 tggaccaaagacttcaaatatcttgctcataaacagactcatgtttcactttggattc 59619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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