View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0780_low_39 (Length: 317)
Name: NF0780_low_39
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_low_39 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 95 - 317
Target Start/End: Original strand, 50569022 - 50569244
Alignment:
| Q |
95 |
gttgtgacaagaacaccaactcaggtggctagccatgctcaaaagtactttcttcgccagaattcggtgaagaaagagaggaaaagatcaagtattcatg |
194 |
Q |
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| T |
50569022 |
gttgtgacaagaacaccaactcaggtggctagccatgctcaaaagtactttcttcgccagaattcggtgaagaaagagaggaaaagatcaagtattcatg |
50569121 |
T |
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| Q |
195 |
acattacatcagtggacagtaactcagctcctgtgcctattgatcagaactgggttcctcctcctggtggtggttcaatgcaacaacagtctccagaaat |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50569122 |
acattacatcagtggacagtaactcagctcctgtgcctattgatcagaactgggttcctcctcctggtggtggttcaatgcaacaacagtctccagaaat |
50569221 |
T |
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| Q |
295 |
gcatcattatccatcaaacaatt |
317 |
Q |
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||||||||||||||||||||||| |
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| T |
50569222 |
gcatcattatccatcaaacaatt |
50569244 |
T |
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