View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0780_low_48 (Length: 301)
Name: NF0780_low_48
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 34416376 - 34416156
Alignment:
| Q |
1 |
ttttctataacattagaagcaaacttctgctggctcatctgcactatctgcccagtgaattcctttattatcgcggtacgttcatgtggctttccatgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34416376 |
ttttctataacattagaagcaaacttctgctggctcatctgcactatctgcccagtgaattcctttattatcgcggtacgttcatgtggctttccatgct |
34416277 |
T |
|
| Q |
101 |
ccagcacatgctgaaaaattttaagcaatcaaacgccaaggaaaattaaaagcacaaaacaaactattactatcatttagtttttacttgaagaaatttc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34416276 |
ccagcacatgctgaaaaattttaagcaatcaaacgccaaggaaaattaaaagcacaaaacaaactattactatcatttagtttttacttgaagaaatttc |
34416177 |
T |
|
| Q |
201 |
ataattaattcagggtttcat |
221 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
34416176 |
ataattaattcagggtttcat |
34416156 |
T |
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