View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0780_low_5 (Length: 502)

Name: NF0780_low_5
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0780_low_5
NF0780_low_5
[»] chr5 (5 HSPs)
chr5 (89-386)||(42268530-42268825)
chr5 (164-320)||(40599702-40599857)
chr5 (452-492)||(42268891-42268931)
chr5 (459-492)||(40599988-40600021)
chr5 (452-492)||(24867195-24867235)
[»] chr7 (4 HSPs)
chr7 (89-386)||(24718133-24718427)
chr7 (89-320)||(43032197-43032427)
chr7 (452-492)||(24718027-24718067)
chr7 (452-484)||(32979231-32979263)
[»] chr3 (2 HSPs)
chr3 (89-320)||(31699405-31699636)
chr3 (452-492)||(31699240-31699280)
[»] chr1 (3 HSPs)
chr1 (96-261)||(2077151-2077315)
chr1 (452-492)||(2077473-2077513)
chr1 (452-492)||(11814714-11814754)
[»] chr2 (4 HSPs)
chr2 (89-318)||(9910828-9911035)
chr2 (180-386)||(9910754-9910966)
chr2 (452-492)||(14950825-14950865)
chr2 (452-487)||(27888780-27888815)
[»] chr8 (4 HSPs)
chr8 (224-321)||(23636038-23636135)
chr8 (452-492)||(23635873-23635913)
chr8 (453-492)||(5515303-5515342)
chr8 (453-492)||(23635825-23635864)
[»] scaffold0022 (1 HSPs)
scaffold0022 (97-205)||(67162-67273)
[»] chr4 (2 HSPs)
chr4 (462-495)||(14441134-14441167)
chr4 (452-492)||(55728714-55728754)


Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 89 - 386
Target Start/End: Original strand, 42268530 - 42268825
Alignment:
Q  89 ctcgtctggctcatcttgagttaacggtgatgcgagtggtggctgatgttagtaacataaggtgacgactgttggttttttgagttaacgatgatgtggg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42268530 ctcgtctggctcatcttgagttaacggtgatgcgagtggtggctgatgttagtaacataaggtgacgactgttggttttttgagttaacgatgatgtggg 42268629  T
Q  189 tggttattggtgttggttacatattgtttttgttgttgggttgggagttgaaacgtaaatggtgtcttttttgcgtggtggtgatattttggtgttaatg 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42268630 tggttattggtgttggttacatattgtttttgttgttgggttgggagttgaaacgtaaatggtgtcttttttgcgtggtggtgatattttggtgttaatg 42268729  T
Q  289 attagaaacttgtgagttggttttgtttttgggaaannnnnnnnccgtttgttgtgtttcgtgctggtttacattatggtgttgatactgggtatttt 386  Q
    |||||||||||||||||||| ||||||||||||||         || |||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  42268730 attagaaacttgtgagttgggtttgtttttgggaa--tttttttccatttgttgtgtttcgtgctggtttacattgtggtgttgatattgggtatttt 42268825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 164 - 320
Target Start/End: Original strand, 40599702 - 40599857
Alignment:
Q  164 ttttttgagttaacgatgatgtgggtggttattggtgttggttacatattgtttttgttgttgggttgggagttgaaacgtaaatggtgtcttttttgcg 263  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||  |||||||   ||||||||| ||||| || |||| |||||||||||||||     
T  40599702 ttttttgagtcaacgatgatgtgggtggttattagtgttggttacataaggtttttgcacttgggttggtagttggaatgtaa-tggtgtcttttttgca 40599800  T
Q  264 tggtggtgatattttggtgttaatgattagaaacttgtgagttggttttgtttttgg 320  Q
    ||||||||||||||||||||| ||| | |||| |||||||||||||||| |||||||    
T  40599801 tggtggtgatattttggtgttgatgttgagaagcttgtgagttggttttatttttgg 40599857  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 492
Target Start/End: Original strand, 42268891 - 42268931
Alignment:
Q  452 ctggtactgatttttggtgaggattaatggtggtttctgtg 492  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  42268891 ctggttctgatttttggtgaggattaatggtggtttttgtg 42268931  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 492
Target Start/End: Original strand, 40599988 - 40600021
Alignment:
Q  459 tgatttttggtgaggattaatggtggtttctgtg 492  Q
    ||||||||||||||||||||||||||||| ||||    
T  40599988 tgatttttggtgaggattaatggtggtttttgtg 40600021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 452 - 492
Target Start/End: Original strand, 24867195 - 24867235
Alignment:
Q  452 ctggtactgatttttggtgaggattaatggtggtttctgtg 492  Q
    ||||| || ||||||||||||||||||||||||||| ||||    
T  24867195 ctggtgctaatttttggtgaggattaatggtggtttttgtg 24867235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 89 - 386
Target Start/End: Complemental strand, 24718427 - 24718133
Alignment:
Q  89 ctcgtctggctcatcttgagttaacggtgatgcgagtggtggctgatgttagtaacataaggtgacgactgttggttttttgagttaacgatgatgtggg 188  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24718427 ctcgtccggctcatcttgagttaacggtgatgcgagtggtggttgatgtttgtaacataaggtgacgactgttggttttttgagttaacgatgatgtggg 24718328  T
Q  189 tggttattggtgttggttacatattgtttttgttgttgggttgggagttgaaacgtaaatggtgtcttttttgcgtggtggtgatattttggtgttaatg 288  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  24718327 tggttattggtgttggttacat-ttgtttttgttgttgggttgggagttgaaacgtaaatggtgtcttttttgtgtggtggtgatattttggtattaatg 24718229  T
Q  289 attagaaacttgtgagttggttttgtttttgggaaannnnnnnnccgtttgttgtgtttcgtgctggtttacattatggtgttgatactgggtatttt 386  Q
    ||||||| |||||||||||||||||||||||||  |        |||| ||| ||| |||||||||||||||||  ||||||||||||||||| ||||    
T  24718228 attagaagcttgtgagttggttttgtttttggg--attttttttccgtctgtggtgcttcgtgctggtttacatggtggtgttgatactgggtctttt 24718133  T

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Target: chr7; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 89 - 320
Target Start/End: Original strand, 43032197 - 43032427
Alignment:
Q  89 ctcgtctggctcatcttgagttaacggtgatgcgagtggtggctgatgttagtaacataaggtgacgactgttggttttttgagttaacgatgatgtggg 188  Q
    |||||| ||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||  ||||||||||||||| |||||||||||||||    
T  43032197 ctcgtccggctcatcttgagttaacggtgatgtgagtggtggttggtgttagtaacataaggtgacggttgttggttttttgagctaacgatgatgtggg 43032296  T
Q  189 tggttattggtgttggttacatattgtttttgttgttgggttgggagttgaaacgtaaatggtgtcttttttgcgtggtggtgatattttggtgttaatg 288  Q
    |||||||||||||||||||||||  | ||||| ||||||||||||||||  || ||||||||||| |||||||||||||||||||||||||||||| |||    
T  43032297 tggttattggtgttggttacata-aggttttgctgttgggttgggagttagaatgtaaatggtgtattttttgcgtggtggtgatattttggtgttgatg 43032395  T
Q  289 attagaaacttgtgagttggttttgtttttgg 320  Q
    || |||| |||||| |||||||||||||||||    
T  43032396 atgagaagcttgtgtgttggttttgtttttgg 43032427  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 492
Target Start/End: Complemental strand, 24718067 - 24718027
Alignment:
Q  452 ctggtactgatttttggtgaggattaatggtggtttctgtg 492  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  24718067 ctggtgctgatttttggtgaggattaatggtggtttttgtg 24718027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 452 - 484
Target Start/End: Complemental strand, 32979263 - 32979231
Alignment:
Q  452 ctggtactgatttttggtgaggattaatggtgg 484  Q
    ||||| |||||||||||||||||||||||||||    
T  32979263 ctggtgctgatttttggtgaggattaatggtgg 32979231  T

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Target: chr3 (Bit Score: 152; Significance: 3e-80; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 89 - 320
Target Start/End: Complemental strand, 31699636 - 31699405
Alignment:
Q  89 ctcgtctggctcatcttgagttaacggtgatgcgagtggtggctgatgttagtaacataaggtgacgactgttggttttttgagttaacgatgatgtggg 188  Q
    |||||| | ||||||||||||||||| |||||| |||||||| |  |||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  31699636 ctcgtccgactcatcttgagttaacgctgatgcaagtggtggtttgtgttagtaacataaggtgacgattgttggttttttgaggtaacgatgatgtggg 31699537  T
Q  189 tggttattggtgttggttacatattgtttttgttgttgggttgggagttgaaacgtaaatggtgtcttttttgcgtggtggtgatattttggtgttaatg 288  Q
    || |||| |||||||| ||| ||  ||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||| |||    
T  31699536 tgcttataggtgttggctacgtaaggtttttgttgttgggttgggagttggaacgtaaatggtgtcttttttgtatggtggtgatattttggtgttgatg 31699437  T
Q  289 attagaaacttgtgagttggttttgtttttgg 320  Q
    ||||||| ||||||||||||||||||||||||    
T  31699436 attagaagcttgtgagttggttttgtttttgg 31699405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 492
Target Start/End: Complemental strand, 31699280 - 31699240
Alignment:
Q  452 ctggtactgatttttggtgaggattaatggtggtttctgtg 492  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  31699280 ctggtgctgatttttggtgaggattaatggtggtttttgtg 31699240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 96 - 261
Target Start/End: Original strand, 2077151 - 2077315
Alignment:
Q  96 ggctcatcttgagttaacggtgatgcgagtggtggctgatgttagtaacataaggtgacgactgttggttttttgagttaacgatgatgtgggtggttat 195  Q
    |||||||||||||||||| |||||||||||||||| || ||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  2077151 ggctcatcttgagttaacagtgatgcgagtggtggttggtgtcagtaacataaggtgacggttgttggttttttgagttaacgatgatgtgggtggttat 2077250  T
Q  196 tggtgttggttacatattgtttttgttgttgggttgggagttgaaacgtaaatggtgtcttttttg 261  Q
    ||||| ||||||||||  ||||||| ||||||||||||| ||| || |||||||||||||||||||    
T  2077251 tggtgatggttacata-ggtttttgatgttgggttgggatttggaatgtaaatggtgtcttttttg 2077315  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 492
Target Start/End: Original strand, 2077473 - 2077513
Alignment:
Q  452 ctggtactgatttttggtgaggattaatggtggtttctgtg 492  Q
    ||||||| |||||||||||||||||||||||||||| ||||    
T  2077473 ctggtaccgatttttggtgaggattaatggtggtttttgtg 2077513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 452 - 492
Target Start/End: Complemental strand, 11814754 - 11814714
Alignment:
Q  452 ctggtactgatttttggtgaggattaatggtggtttctgtg 492  Q
    ||||| ||| |||||||||||||||||||||||||| ||||    
T  11814754 ctggtgctggtttttggtgaggattaatggtggtttttgtg 11814714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 7e-44; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 89 - 318
Target Start/End: Complemental strand, 9911035 - 9910828
Alignment:
Q  89 ctcgtctggctcatcttgagttaacggtgatgcgagtggtggctgatgttagtaacataaggtgacgactgttggttttttgagttaacgatgatgtggg 188  Q
    |||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| | |||||||                      ||||||||    
T  9911035 ctcgtctggctcatcttgagttaacggtgatgcgagtgatggttggtgttagtaacataacgcgacgact----------------------gatgtggg 9910958  T
Q  189 tggttattggtgttggttacatattgtttttgttgttgggttgggagttgaaacgtaaatggtgtcttttttgcgtggtggtgatattttggtgttaatg 288  Q
    ||||||| |||||||||||||||  ||||||  ||||||||||||||||  ||| |||||||||| |||||||||||||||||||||||||||||| |||    
T  9910957 tggttataggtgttggttacataaggtttttcctgttgggttgggagtttgaacttaaatggtgtattttttgcgtggtggtgatattttggtgttgatg 9910858  T
Q  289 attagaaacttgtgagttggttttgttttt 318  Q
    ||||||| ||||| ||||||||||||||||    
T  9910857 attagaagcttgtaagttggttttgttttt 9910828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 180 - 386
Target Start/End: Complemental strand, 9910966 - 9910754
Alignment:
Q  180 tgatgtgggtggttattggtgttggttacatattgtttttgttgttgggttgggagttgaaacgtaaatggtgtcttttttgcgtggtggtgatattttg 279  Q
    |||||||||||||||| |||||||||||||||  ||||||  ||||||||||||||||  ||| |||||||||| |||||||||||||||||||||||||    
T  9910966 tgatgtgggtggttataggtgttggttacataaggtttttcctgttgggttgggagtttgaacttaaatggtgtattttttgcgtggtggtgatattttg 9910867  T
Q  280 gtgttaatgattagaaacttgtgagttggttttgtttttgggaaannnnnnnn------ccgtttgttgtgtttcgtgctggtttacattatggtgttga 373  Q
    ||||| |||||||||| ||||| |||||||||||||||| || |               |||||||| ||| |||||| |||||| ||| ||||||||||    
T  9910866 gtgttgatgattagaagcttgtaagttggttttgttttttgggatttttttttgtttttccgtttgtggtgcttcgtggtggtttccatgatggtgttga 9910767  T
Q  374 tactgggtatttt 386  Q
    |||||||| ||||    
T  9910766 tactgggtctttt 9910754  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 492
Target Start/End: Original strand, 14950825 - 14950865
Alignment:
Q  452 ctggtactgatttttggtgaggattaatggtggtttctgtg 492  Q
    |||||| ||||||||||||||||||||||||||||| ||||    
T  14950825 ctggtattgatttttggtgaggattaatggtggtttttgtg 14950865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 487
Target Start/End: Complemental strand, 27888815 - 27888780
Alignment:
Q  452 ctggtactgatttttggtgaggattaatggtggttt 487  Q
    ||||| ||||||||||||||||||||||||||||||    
T  27888815 ctggtgctgatttttggtgaggattaatggtggttt 27888780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 224 - 321
Target Start/End: Complemental strand, 23636135 - 23636038
Alignment:
Q  224 ttgggttgggagttgaaacgtaaatggtgtcttttttgcgtggtggtgatattttggtgttaatgattagaaacttgtgagttggttttgtttttggg 321  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||| ||||||| || | |||||||||||||||||||||||    
T  23636135 ttgggttgggagttggaacgtaaatgatgtcttttttgcgtggtggtgatattttagtgttgatgattataagcatgtgagttggttttgtttttggg 23636038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 492
Target Start/End: Complemental strand, 23635913 - 23635873
Alignment:
Q  452 ctggtactgatttttggtgaggattaatggtggtttctgtg 492  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  23635913 ctggtgctgatttttggtgaggattaatggtggtttttgtg 23635873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 492
Target Start/End: Complemental strand, 5515342 - 5515303
Alignment:
Q  453 tggtactgatttttggtgaggattaatggtggtttctgtg 492  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  5515342 tggtgctgatttttggtgaggattaatggtggtttttgtg 5515303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 492
Target Start/End: Complemental strand, 23635864 - 23635825
Alignment:
Q  453 tggtactgatttttggtgaggattaatggtggtttctgtg 492  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  23635864 tggtgctgatttttggtgaggattaatggtggtttttgtg 23635825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 67162 - 67273
Alignment:
Q  97 gctcatcttgagttaacggtgatgcgagtggtggctgatgttagtaacataaggtgacgactgttgg---ttttttgagttaacgatgatgtgggtggtt 193  Q
    |||||||||||| ||||||| ||||| ||||||| ||||||||| |||||||||||||   ||||||   | ||||||||||||| |||||| ||| |||    
T  67162 gctcatcttgagataacggttatgcgggtggtggttgatgttagcaacataaggtgaccgttgttggtgttattttgagttaacggtgatgtaggtagtt 67261  T
Q  194 attggtgttggt 205  Q
    ||||||||||||    
T  67262 attggtgttggt 67273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 495
Target Start/End: Complemental strand, 14441167 - 14441134
Alignment:
Q  462 tttttggtgaggattaatggtggtttctgtgctg 495  Q
    |||||||||||||||||||||||||| |||||||    
T  14441167 tttttggtgaggattaatggtggtttttgtgctg 14441134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 452 - 492
Target Start/End: Complemental strand, 55728754 - 55728714
Alignment:
Q  452 ctggtactgatttttggtgaggattaatggtggtttctgtg 492  Q
    ||||||||  |||||||||||||||||||||||||| ||||    
T  55728754 ctggtactagtttttggtgaggattaatggtggtttttgtg 55728714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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