View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0780_low_53 (Length: 289)

Name: NF0780_low_53
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0780_low_53
NF0780_low_53
[»] chr6 (15 HSPs)
chr6 (63-220)||(3314759-3314924)
chr6 (71-200)||(515915-516045)
chr6 (70-125)||(3712275-3712330)
chr6 (63-106)||(22260408-22260451)
chr6 (73-125)||(21021092-21021144)
chr6 (71-125)||(21020904-21020958)
chr6 (70-125)||(19264721-19264776)
chr6 (68-123)||(33551086-33551141)
chr6 (70-125)||(33806702-33806757)
chr6 (67-125)||(17848827-17848885)
chr6 (68-125)||(4964287-4964344)
chr6 (68-125)||(7955150-7955207)
chr6 (70-123)||(9307282-9307335)
chr6 (68-108)||(29920469-29920509)
chr6 (86-201)||(31951626-31951742)
[»] chr8 (15 HSPs)
chr8 (66-125)||(41303150-41303209)
chr8 (66-122)||(7681012-7681068)
chr8 (70-114)||(21600454-21600498)
chr8 (68-123)||(34281384-34281439)
chr8 (70-125)||(4586802-4586857)
chr8 (70-125)||(29908950-29909005)
chr8 (68-197)||(21601957-21602087)
chr8 (64-125)||(6915514-6915575)
chr8 (68-125)||(7603943-7604000)
chr8 (77-122)||(13002956-13003001)
chr8 (68-125)||(21600637-21600693)
chr8 (70-123)||(36469560-36469613)
chr8 (66-106)||(3662364-3662404)
chr8 (70-102)||(13910528-13910560)
chr8 (70-126)||(42660067-42660123)
[»] chr3 (11 HSPs)
chr3 (70-125)||(43838822-43838877)
chr3 (68-125)||(38989779-38989836)
chr3 (144-207)||(37326720-37326783)
chr3 (71-106)||(1324543-1324578)
chr3 (69-206)||(21568452-21568588)
chr3 (70-125)||(26483089-26483143)
chr3 (66-125)||(40619189-40619248)
chr3 (70-123)||(10566103-10566156)
chr3 (70-123)||(47944335-47944388)
chr3 (70-126)||(40618925-40618981)
chr3 (65-101)||(46848393-46848429)
[»] chr4 (28 HSPs)
chr4 (68-125)||(38080935-38080992)
chr4 (66-220)||(31903387-31903543)
chr4 (67-125)||(46217207-46217265)
chr4 (68-125)||(4161672-4161729)
chr4 (68-108)||(40407653-40407693)
chr4 (70-125)||(8755963-8756018)
chr4 (66-125)||(13834375-13834434)
chr4 (71-125)||(37197583-37197637)
chr4 (68-125)||(924812-924869)
chr4 (70-123)||(37687147-37687200)
chr4 (66-123)||(46805801-46805858)
chr4 (66-200)||(11839957-11840092)
chr4 (171-206)||(32123949-32123984)
chr4 (66-125)||(32934139-32934198)
chr4 (66-125)||(46804803-46804862)
chr4 (66-116)||(3528113-3528163)
chr4 (68-126)||(32123825-32123883)
chr4 (68-125)||(971895-971952)
chr4 (169-206)||(8170879-8170916)
chr4 (66-123)||(8170962-8171019)
chr4 (68-125)||(36218542-36218599)
chr4 (68-125)||(51150890-51150947)
chr4 (66-103)||(56095068-56095105)
chr4 (70-125)||(12922432-12922487)
chr4 (75-123)||(30888523-30888571)
chr4 (155-218)||(40836801-40836865)
chr4 (66-106)||(49887582-49887622)
chr4 (77-125)||(51234462-51234510)
[»] chr1 (13 HSPs)
chr1 (68-200)||(34826847-34826979)
chr1 (67-125)||(1315642-1315700)
chr1 (71-125)||(39329975-39330029)
chr1 (70-200)||(27900671-27900802)
chr1 (68-123)||(32743331-32743386)
chr1 (159-202)||(44391652-44391695)
chr1 (65-123)||(8234316-8234374)
chr1 (145-195)||(8791837-8791887)
chr1 (146-200)||(38445035-38445089)
chr1 (68-101)||(9553107-9553140)
chr1 (74-123)||(12436944-12436993)
chr1 (67-100)||(34827054-34827087)
chr1 (68-125)||(35684888-35684945)
[»] chr5 (18 HSPs)
chr5 (66-125)||(6217642-6217701)
chr5 (79-125)||(34034838-34034884)
chr5 (68-125)||(23159079-23159136)
chr5 (68-104)||(3709598-3709634)
chr5 (70-106)||(8407214-8407250)
chr5 (67-125)||(17676577-17676635)
chr5 (79-125)||(28503836-28503882)
chr5 (66-103)||(11498047-11498084)
chr5 (66-103)||(11505403-11505440)
chr5 (66-103)||(11512797-11512834)
chr5 (66-103)||(11520173-11520210)
chr5 (66-103)||(11527581-11527618)
chr5 (66-103)||(11534987-11535024)
chr5 (70-103)||(33598357-33598390)
chr5 (68-125)||(35293809-35293866)
chr5 (68-104)||(6645712-6645748)
chr5 (70-106)||(9577106-9577142)
chr5 (65-121)||(28504003-28504059)
[»] chr2 (12 HSPs)
chr2 (71-125)||(29926887-29926941)
chr2 (66-125)||(34883946-34884005)
chr2 (71-123)||(6923757-6923809)
chr2 (74-125)||(2687158-2687209)
chr2 (70-125)||(40124316-40124371)
chr2 (71-101)||(1090195-1090225)
chr2 (76-125)||(5709963-5710012)
chr2 (70-123)||(19206503-19206556)
chr2 (76-125)||(20966215-20966264)
chr2 (65-101)||(6923868-6923904)
chr2 (71-123)||(28779733-28779785)
chr2 (65-101)||(28779844-28779880)
[»] chr7 (16 HSPs)
chr7 (66-123)||(19303560-19303617)
chr7 (68-125)||(23474557-23474614)
chr7 (68-122)||(30604314-30604368)
chr7 (68-125)||(23441503-23441560)
chr7 (74-127)||(37502223-37502276)
chr7 (66-193)||(32996432-32996560)
chr7 (68-124)||(38838646-38838702)
chr7 (70-125)||(10228752-10228807)
chr7 (86-125)||(11459010-11459049)
chr7 (67-125)||(14669496-14669554)
chr7 (68-125)||(5358257-5358314)
chr7 (68-125)||(23457814-23457871)
chr7 (68-100)||(5362460-5362492)
chr7 (65-93)||(5429528-5429556)
chr7 (188-220)||(23920247-23920279)
chr7 (143-223)||(45539902-45539982)
[»] scaffold0329 (1 HSPs)
scaffold0329 (68-125)||(6246-6303)
[»] scaffold0102 (2 HSPs)
scaffold0102 (166-220)||(27175-27230)
scaffold0102 (68-125)||(27093-27150)
[»] scaffold0687 (1 HSPs)
scaffold0687 (68-125)||(1627-1684)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 63 - 220
Target Start/End: Complemental strand, 3314924 - 3314759
Alignment:
Q  63 ggtcctcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagtacccgacgtaaaatgatccctcaatgttgtcaataac 162  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3314924 ggtcctcaatgtatcaaaattttaaaaaagtcactgattttgcattccgctagtcaaaatagtacctgacgtaaaatgatccctcaatgttgtcaataac 3314825  T
Q  163 tcttttctta--------tatgaactgatataacaataagtaagtatattgaggactgatatgaca 220  Q
    ||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3314824 tcttttcttatatgcttatatgaactgatataacaataagtaagtatattgaggactgatatgaca 3314759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 200
Target Start/End: Complemental strand, 516045 - 515915
Alignment:
Q  71 atgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagtacccgacgtaaa-atgatccctcaatgttgtcaataactcttttc 169  Q
    ||||||| |||||  |||||||||| ||||| |||| | ||||||||||||||||  | || || || ||| ||||||||| ||| || |||||||||||    
T  516045 atgtatcgaaattccaaaatagtcaatgattgtgcacttcgttagtcaaaatagtctctgatgttaagatggtccctcaatattgacattaactcttttc 515946  T
Q  170 ttatatgaactgatataacaataagtaagta 200  Q
     ||||  ||||||||| ||||||||||||||    
T  515945 atatagaaactgatatgacaataagtaagta 515915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 3712330 - 3712275
Alignment:
Q  70 aatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    |||||||  ||||| |||||||||||||||||||||||||||| ||||||||||||    
T  3712330 aatgtattgaaattctaaaatagtcattgattatgcattccgtcagtcaaaatagt 3712275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 106
Target Start/End: Original strand, 22260408 - 22260451
Alignment:
Q  63 ggtcctcaatgtatcaaaattttaaaatagtcattgattatgca 106  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  22260408 ggtcctcaatgtatcaaaattttaaaatagtcattgattgtgca 22260451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 21021144 - 21021092
Alignment:
Q  73 gtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||||||||||||||||| ||||||||||||||   ||||||||||||||    
T  21021144 gtatcaaaattttaaaatagttattgattatgcattttattagtcaaaatagt 21021092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 21020904 - 21020958
Alignment:
Q  71 atgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    |||||||||||||||||||||||||| |||||| ||||   ||||||||||||||    
T  21020904 atgtatcaaaattttaaaatagtcatcgattatacatttttttagtcaaaatagt 21020958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 19264776 - 19264721
Alignment:
Q  70 aatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    |||||||| ||||||||||||||||  |||||||||| |  |||||||||||||||    
T  19264776 aatgtatcgaaattttaaaatagtctctgattatgcactatgttagtcaaaatagt 19264721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 33551141 - 33551086
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaata 123  Q
    |||||||||||||||||||||||| |   ||||| |||||| ||||||||||||||    
T  33551141 tcaatgtatcaaaattttaaaatattatctgattgtgcatttcgttagtcaaaata 33551086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 33806702 - 33806757
Alignment:
Q  70 aatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    |||||||| ||||| |||||||||||||||||||| | |  |||||||||||||||    
T  33806702 aatgtatcgaaattctaaaatagtcattgattatgtactttgttagtcaaaatagt 33806757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 17848885 - 17848827
Alignment:
Q  67 ctcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||||||||||||||||||||| |    |||| |||||| ||||||||||||||||    
T  17848885 ctcaatgtatcaaaattttaaaataatttcagattgtgcatttcgttagtcaaaatagt 17848827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 4964344 - 4964287
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||||| |||||||||||||||||| | |||||||| |   ||||||||||||||    
T  4964344 tcaatgtattaaaattttaaaatagtcaataattatgcactttattagtcaaaatagt 4964287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 7955207 - 7955150
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||||||||||||||||| || ||||||||| | || |  |||||||||||||||    
T  7955207 tcaatgtatcaaaattttaaagtattcattgattgttcactgtgttagtcaaaatagt 7955150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 9307282 - 9307335
Alignment:
Q  70 aatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaata 123  Q
    ||||||||||||||||||||||||  || |||||||| | ||||| ||||||||    
T  9307282 aatgtatcaaaattttaaaatagttttttattatgcacttcgttaatcaaaata 9307335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 29920469 - 29920509
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcatt 108  Q
    ||||||||||||||||| ||||||||  |||||||||||||    
T  29920469 tcaatgtatcaaaatttcaaaatagtttttgattatgcatt 29920509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 201
Target Start/End: Original strand, 31951626 - 31951742
Alignment:
Q  86 aaaatagtcattgattatgcattccgttagtcaaaatagtacccgacgt-aaaatgatccctcaatgttgtcaataactcttttcttatatgaactgata 184  Q
    ||||||||  |||||| |||||||  ||||| ||||||||    ||||| ||||| |||| ||||||||| |||||||| |||| ||||| | |||  ||    
T  31951626 aaaatagtatttgattgtgcattcttttagttaaaatagtttttgacgttaaaataatccttcaatgttgacaataactatttttttataaggactagta 31951725  T
Q  185 taacaataagtaagtat 201  Q
    ||| |||||||||||||    
T  31951726 taataataagtaagtat 31951742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 41303209 - 41303150
Alignment:
Q  66 cctcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||    
T  41303209 cctcaatgtatcaaaattttaaaatagtcattgattatgcactttgctagtcaaaatagt 41303150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 7681068 - 7681012
Alignment:
Q  66 cctcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaat 122  Q
    ||||||||||||||||||||||||||||  |||||| |||||| |||||||||||||    
T  7681068 cctcaatgtatcaaaattttaaaatagtatttgattgtgcatttcgttagtcaaaat 7681012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 21600454 - 21600498
Alignment:
Q  70 aatgtatcaaaattttaaaatagtcattgattatgcattccgtta 114  Q
    |||||||||||||||||||||||||||||||| |||||| |||||    
T  21600454 aatgtatcaaaattttaaaatagtcattgattgtgcatttcgtta 21600498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 34281384 - 34281439
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaata 123  Q
    |||||||| |||||||||||||||||| ||||||||||| |  |||||||||||||    
T  34281384 tcaatgtaccaaaattttaaaatagtccttgattatgcactatgttagtcaaaata 34281439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 4586802 - 4586857
Alignment:
Q  70 aatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||| |||||||||||||||||  ||||| |||| | ||||||||||||||||    
T  4586802 aatgtattaaaattttaaaatagtctatgattttgcacttcgttagtcaaaatagt 4586857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 29908950 - 29909005
Alignment:
Q  70 aatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    |||||||  ||||||||||||||| ||||||| ||||||  |||||||||||||||    
T  29908950 aatgtattgaaattttaaaatagttattgattgtgcatttggttagtcaaaatagt 29909005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 197
Target Start/End: Original strand, 21601957 - 21602087
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagtacccgacg-taaaatgatccctcaatgttgtcaataactctt 166  Q
    ||||||||||||||||  |||||||||  ||||| ||||    |||||||||| |||| || |||  |||||| |||||||||| ||   ||||||||||    
T  21601957 tcaatgtatcaaaattccaaaatagtctctgattgtgcacgttgttagtcaaagtagtccctgacactaaaataatccctcaatattcataataactctt 21602056  T
Q  167 ttcttatatgaactgatataacaataagtaa 197  Q
    ||| |||| | ||||| || |||||||||||    
T  21602057 ttcatatagggactgaaatgacaataagtaa 21602087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 6915575 - 6915514
Alignment:
Q  64 gtcctcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||| |||||||||||||||||||||| |  |||||| ||||||  |||| ||||||||||    
T  6915575 gtccttaatgtatcaaaattttaaaataatttttgattgtgcattatgttaatcaaaatagt 6915514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 7603943 - 7604000
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    |||||||||||||||||||||||| |  |||||| |||| | |||| |||||||||||    
T  7603943 tcaatgtatcaaaattttaaaataatttttgattgtgcacttcgttggtcaaaatagt 7604000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 13002956 - 13003001
Alignment:
Q  77 caaaattttaaaatagtcattgattatgcattccgttagtcaaaat 122  Q
    |||||||||||||||||| ||||||||||| |  ||||||||||||    
T  13002956 caaaattttaaaatagtctttgattatgcactatgttagtcaaaat 13003001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 21600693 - 21600637
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||||||||||||  ||||||||| |||||| ||||||| || ||||||||||||    
T  21600693 tcaatgtatcaaaattc-aaaatagtctttgattgtgcattctgtaagtcaaaatagt 21600637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 36469613 - 36469560
Alignment:
Q  70 aatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaata 123  Q
    ||||||||||||||||||||||||| || ||| |||||| || ||||| |||||    
T  36469613 aatgtatcaaaattttaaaatagtccttaattgtgcatttcgctagtccaaata 36469560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 3662364 - 3662404
Alignment:
Q  66 cctcaatgtatcaaaattttaaaatagtcattgattatgca 106  Q
    ||||||||||||||||||||||||||||  |||||| ||||    
T  3662364 cctcaatgtatcaaaattttaaaatagttcttgattgtgca 3662404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 13910560 - 13910528
Alignment:
Q  70 aatgtatcaaaattttaaaatagtcattgatta 102  Q
    ||||||||||||||||||||| |||||||||||    
T  13910560 aatgtatcaaaattttaaaattgtcattgatta 13910528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 42660123 - 42660067
Alignment:
Q  70 aatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagta 126  Q
    ||||||| || |||||||||||||| ||||||||||| ||   ||||||||||||||    
T  42660123 aatgtattaagattttaaaatagtctttgattatgcactctcgtagtcaaaatagta 42660067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 43838877 - 43838822
Alignment:
Q  70 aatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    |||||||||||||||||||||||||||||||| ||||||  |||||||||||||||    
T  43838877 aatgtatcaaaattttaaaatagtcattgattgtgcattttgttagtcaaaatagt 43838822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 38989779 - 38989836
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    |||||||||||||||||||||||||||  ||||||||||||  ||| |||||||||||    
T  38989779 tcaatgtatcaaaattttaaaatagtccgtgattatgcattatgttcgtcaaaatagt 38989836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 37326720 - 37326783
Alignment:
Q  144 cctcaatgttgtcaataactcttttcttatatgaactgatataacaataagtaagtatattgag 207  Q
    ||||||| ||| || ||||||||||| ||||||||||||||| ||| ||||||| |||||||||    
T  37326720 cctcaatattgacattaactcttttcatatatgaactgatatgacactaagtaaatatattgag 37326783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 106
Target Start/End: Original strand, 1324543 - 1324578
Alignment:
Q  71 atgtatcaaaattttaaaatagtcattgattatgca 106  Q
    ||||||||||||||||||||||||| ||||||||||    
T  1324543 atgtatcaaaattttaaaatagtcaatgattatgca 1324578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 206
Target Start/End: Complemental strand, 21568588 - 21568452
Alignment:
Q  69 caatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagtacccgac-gtaaaatgatccctcaatgttgtcaataactcttt 167  Q
    ||||||||||||| |||||||||||| |||||  |||| || |||| ||||||||||  | |||  |||||| ||  || |||| || ||||||||||||    
T  21568588 caatgtatcaaaaatttaaaatagtctttgatagtgcactctgttattcaaaatagtctctgacactaaaataat--cttaatgctgacaataactcttt 21568491  T
Q  168 tcttatatgaactgatataacaataagtaagtatattga 206  Q
    || |||| | ||| | || | ||||||||||||||||||    
T  21568490 tcatataaggactaaaatgataataagtaagtatattga 21568452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 26483089 - 26483143
Alignment:
Q  70 aatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    |||||||||||||| |||||||||  ||||||||||||||| ||| ||||||||||    
T  26483089 aatgtatcaaaattctaaaatagtttttgattatgcattccatta-tcaaaatagt 26483143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 40619248 - 40619189
Alignment:
Q  66 cctcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    |||||||||||||||||||||||||||||  ||||| |||| |  |||| ||||||||||    
T  40619248 cctcaatgtatcaaaattttaaaatagtctctgattgtgcactatgttattcaaaatagt 40619189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 10566103 - 10566156
Alignment:
Q  70 aatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaata 123  Q
    ||||||||||||||| |||||| ||||||||| | || | ||||||||||||||    
T  10566103 aatgtatcaaaatttcaaaataatcattgattgtccacttcgttagtcaaaata 10566156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 47944335 - 47944388
Alignment:
Q  70 aatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaata 123  Q
    |||||||| |||||||||||||||| |||||| |||| |  |||||||||||||    
T  47944335 aatgtatcgaaattttaaaatagtctttgattgtgcactttgttagtcaaaata 47944388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 40618925 - 40618981
Alignment:
Q  70 aatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagta 126  Q
    ||||||| |||||||||||||| || |||||| |||| |  ||||||||||||||||    
T  40618925 aatgtatgaaaattttaaaataatccttgattgtgcaatttgttagtcaaaatagta 40618981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 46848429 - 46848393
Alignment:
Q  65 tcctcaatgtatcaaaattttaaaatagtcattgatt 101  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  46848429 tcctcaatgtatcaaaatttcaaaatagtccttgatt 46848393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 38080992 - 38080935
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    |||||||||||||||||||||||||||   ||||||||||| ||||||||||||||||    
T  38080992 tcaatgtatcaaaattttaaaatagtctacgattatgcatttcgttagtcaaaatagt 38080935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 220
Target Start/End: Complemental strand, 31903543 - 31903387
Alignment:
Q  66 cctcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagtacccgacgta-aaatgatccctcaatgttgtcaataactc 164  Q
    |||||| |||||||||||  |||||||||  ||||  |||| |  |||| |||||||||| |  |||| | |||| ||||||||||  |  |||||||||    
T  31903543 cctcaacgtatcaaaattccaaaatagtctctgatcgtgcactttgttaatcaaaatagtccatgacgcataaataatccctcaatactcacaataactc 31903444  T
Q  165 ttttcttatatgaactgatataacaataagtaagtatattg-aggactgatatgaca 220  Q
    ||||| |||| | ||||| || ||||||||||||||||||| |||||||||||||||    
T  31903443 ttttcatatagggactgaaatgacaataagtaagtatattgaaggactgatatgaca 31903387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 46217265 - 46217207
Alignment:
Q  67 ctcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||| ||||||||| ||||||||||||||||| || ||| ||||||||||||||||    
T  46217265 ctcaatgcatcaaaattataaaatagtcattgattgtgtatttcgttagtcaaaatagt 46217207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 4161672 - 4161729
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||||||||||||| ||||||||| |||||||| ||||| ||| |||||||||||    
T  4161672 tcaatgtatcaaaatttcaaaatagtccttgattatacattctgttggtcaaaatagt 4161729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 40407693 - 40407653
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcatt 108  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  40407693 tcaatgtatcaaaattttaaaatagtcattgattgtgcatt 40407653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 8756018 - 8755963
Alignment:
Q  70 aatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    |||||| ||||||||||||||| |||||||||||||| | ||||| ||||||||||    
T  8756018 aatgtaacaaaattttaaaataatcattgattatgcacttcgttaatcaaaatagt 8755963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 13834375 - 13834434
Alignment:
Q  66 cctcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||| ||||||||||||||||||||| |||||| |||| |  |||||||||||||||    
T  13834375 cctcaatttatcaaaattttaaaatagtccttgattgtgcactttgttagtcaaaatagt 13834434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 37197637 - 37197583
Alignment:
Q  71 atgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    |||||||||| ||||||||||||| ||||||  ||||| ||||||||||||||||    
T  37197637 atgtatcaaagttttaaaatagtccttgattgggcatttcgttagtcaaaatagt 37197583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 924869 - 924812
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    |||||||| |||||||||||||||||   ||||||||||||  |||||||||||||||    
T  924869 tcaatgtagcaaaattttaaaatagtatctgattatgcattatgttagtcaaaatagt 924812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 37687147 - 37687200
Alignment:
Q  70 aatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaata 123  Q
    |||||||||||| ||||||||||||||||||| |||||| || ||||| |||||    
T  37687147 aatgtatcaaaaatttaaaatagtcattgattgtgcatttcgctagtccaaata 37687200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 46805801 - 46805858
Alignment:
Q  66 cctcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaata 123  Q
    ||||||||||| ||||||||||| |||||||||||| | || | ||||||||||||||    
T  46805801 cctcaatgtattaaaattttaaagtagtcattgattgtacacttcgttagtcaaaata 46805858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 200
Target Start/End: Complemental strand, 11840092 - 11839957
Alignment:
Q  66 cctcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagtacccgacg-taaaatgatccctcaatgttgtcaataactc 164  Q
    ||||||||||||||||||| |||||||||  ||||| |||| |  |||| |||||||||| || |||| |||||| ||||| ||||  |  |||||| ||    
T  11840092 cctcaatgtatcaaaatttcaaaatagtccctgattgtgcactttgttaatcaaaatagtccctgacgttaaaatcatcccccaatactcacaataattc 11839993  T
Q  165 ttttcttatatgaactgatataacaataagtaagta 200  Q
    ||||  |||| | ||||| || |||||||| |||||    
T  11839992 tttttatatagggactgaaatgacaataagcaagta 11839957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 206
Target Start/End: Original strand, 32123949 - 32123984
Alignment:
Q  171 tatatgaactgatataacaataagtaagtatattga 206  Q
    ||||||||||||||| ||||||||||||||||||||    
T  32123949 tatatgaactgatatgacaataagtaagtatattga 32123984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 32934198 - 32934139
Alignment:
Q  66 cctcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||||||||||||||||||||||||  |||||| |||| |  | |||||||||||||    
T  32934198 cctcaatgtatcaaaattttaaaatagtttttgattgtgcactttgctagtcaaaatagt 32934139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 46804803 - 46804862
Alignment:
Q  66 cctcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    |||||||||||||||||||||||||||||  ||||| | || |  |||||||||||||||    
T  46804803 cctcaatgtatcaaaattttaaaatagtctctgattgtacactttgttagtcaaaatagt 46804862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 3528113 - 3528163
Alignment:
Q  66 cctcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagt 116  Q
    |||||||||| || ||||| |||||||||||||||| ||||||| ||||||    
T  3528113 cctcaatgtaccagaatttcaaaatagtcattgattgtgcattctgttagt 3528163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 32123825 - 32123883
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagta 126  Q
    ||||||||| ||||||||||||||||| |||||| || | | ||||||| |||||||||    
T  32123825 tcaatgtattaaaattttaaaatagtctttgattttgtacttcgttagttaaaatagta 32123883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 971895 - 971952
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||||||||||||| ||||||||| |||||| |||| |  |||||||||| ||||    
T  971895 tcaatgtatcaaaatttcaaaatagtctttgattgtgcactttgttagtcaaagtagt 971952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 8170879 - 8170916
Alignment:
Q  169 cttatatgaactgatataacaataagtaagtatattga 206  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  8170879 cttatatggactgatatgacaataagtaagtatattga 8170916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 8171019 - 8170962
Alignment:
Q  66 cctcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaata 123  Q
    ||||||||||| ||||||| |||||||||  ||||| |||| | ||||||||||||||    
T  8171019 cctcaatgtataaaaatttcaaaatagtctctgattttgcaattcgttagtcaaaata 8170962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 36218542 - 36218599
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    |||||||||||||| ||||||||||| ||||||| |||| | | ||||| ||||||||    
T  36218542 tcaatgtatcaaaaatttaaaatagttattgattgtgcacttcattagttaaaatagt 36218599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 51150890 - 51150947
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||||||||||||||||||||||   ||||| ||||||  |||||| ||||||||    
T  51150890 tcaatgtatcaaaattttaaaatagttcgtgattgtgcattttgttagtgaaaatagt 51150947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 56095068 - 56095105
Alignment:
Q  66 cctcaatgtatcaaaattttaaaatagtcattgattat 103  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  56095068 cctcaatgtatcaaaattttaaaatagtatttgattat 56095105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 12922487 - 12922432
Alignment:
Q  70 aatgtatcaaaattttaaaatag-tcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||||||||||||||||||| ||||| ||| |||||| |||||||| |||||||    
T  12922487 aatgtatcaaaattttaaaatagttcatt-attttgcatttcgttagtcgaaatagt 12922432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 30888571 - 30888523
Alignment:
Q  75 atcaaaattttaaaatagtcattgattatgcattccgttagtcaaaata 123  Q
    ||||||||||||||||| || |||||||| || || |||||||||||||    
T  30888571 atcaaaattttaaaataatctttgattattcactctgttagtcaaaata 30888523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 40836865 - 40836801
Alignment:
Q  155 tcaataactcttttcttatatgaactgatataacaataagtaagtatat-tgaggactgatatga 218  Q
    ||||||||||||||| |||| | ||||| || ||||||||||||||| | | |||||||||||||    
T  40836865 tcaataactcttttcatatagggactgaaatgacaataagtaagtatttataaggactgatatga 40836801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 49887622 - 49887582
Alignment:
Q  66 cctcaatgtatcaaaattttaaaatagtcattgattatgca 106  Q
    ||||||||||||| ||||||||| ||||| |||||||||||    
T  49887622 cctcaatgtatcataattttaaagtagtccttgattatgca 49887582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 51234510 - 51234462
Alignment:
Q  77 caaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||||||||||||||  | | |||||||| ||||||||||||||||    
T  51234510 caaaattttaaaatagtctctaactatgcatttcgttagtcaaaatagt 51234462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 68 - 200
Target Start/End: Original strand, 34826847 - 34826979
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagtacccgacg-taaaatgatccctcaatgttgtcaataactctt 166  Q
    |||||||||||||||||||||||| ||| ||||| ||||||| |||||||||||||||    |||| |||||| ||| || |||| |  |||||||| ||    
T  34826847 tcaatgtatcaaaattttaaaata-tcactgattgtgcattctgttagtcaaaatagtctttgacgttaaaataatctcttaatgctcacaataactttt 34826945  T
Q  167 ttcttatatgaactgatataacaataagtaagta 200  Q
    ||| |||| |||| || || ||||||||||||||    
T  34826946 ttcatataggaaccgaaatgacaataagtaagta 34826979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 1315642 - 1315700
Alignment:
Q  67 ctcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    |||||||||| |||||| |||||||||||||| || |||| ||||||||| ||||||||    
T  1315642 ctcaatgtattaaaattctaaaatagtcattgcttctgcaatccgttagttaaaatagt 1315700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 39329975 - 39330029
Alignment:
Q  71 atgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||||||||||||||||| ||| | ||||||||||  |||||||||||||||    
T  39329975 atgtatcaaaattttaaaatattcactaattatgcattatgttagtcaaaatagt 39330029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 200
Target Start/End: Original strand, 27900671 - 27900802
Alignment:
Q  70 aatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagtacccgacg-taaaatgatccctcaatgttgtcaataactctttt 168  Q
    |||||||||||||||||||||||||  ||||| |||| ||   |||||||||||||    |||| |||||| ||| ||||||| |  ||| |||||||||    
T  27900671 aatgtatcaaaattttaaaatagtccctgattgtgcactctaatagtcaaaatagtctttgacgctaaaataatctctcaatgcttacaagaactctttt 27900770  T
Q  169 cttatatgaactgatataacaataagtaagta 200  Q
      |||||| ||| | || ||||||||||||||    
T  27900771 aatatatggactaaaatgacaataagtaagta 27900802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 32743386 - 32743331
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaata 123  Q
    |||| ||||||||||||||||||| || |||||| | |||| ||||||||||||||    
T  32743386 tcaacgtatcaaaattttaaaataatctttgattgtacatttcgttagtcaaaata 32743331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 44391652 - 44391695
Alignment:
Q  159 taactcttttcttatatgaactgatataacaataagtaagtata 202  Q
    ||||||||||| |||| |||||||||| ||||||||||||||||    
T  44391652 taactcttttcatataagaactgatattacaataagtaagtata 44391695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 8234374 - 8234316
Alignment:
Q  65 tcctcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaata 123  Q
    |||||||| ||||||||||||||||||||  || ||| ||||||| |||| ||||||||    
T  8234374 tcctcaatatatcaaaattttaaaatagtttttaattgtgcattctgttaatcaaaata 8234316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 8791887 - 8791837
Alignment:
Q  145 ctcaatgttgtcaataactcttttcttatatgaactgatataacaataagt 195  Q
    |||||||||| || |||||||||||||||| ||||||||||  ||||||||    
T  8791887 ctcaatgttgacagtaactcttttcttataagaactgatatgtcaataagt 8791837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 38445035 - 38445089
Alignment:
Q  146 tcaatgttgtcaataactcttttcttatatgaactgatataacaataagtaagta 200  Q
    |||||| || |||||||||||||| |||| ||| |||||| ||||||||||||||    
T  38445035 tcaatgctgacaataactcttttcatataggaattgatatgacaataagtaagta 38445089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 101
Target Start/End: Complemental strand, 9553140 - 9553107
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgatt 101  Q
    ||||||||||||| ||||||||||||||||||||    
T  9553140 tcaatgtatcaaacttttaaaatagtcattgatt 9553107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 12436993 - 12436944
Alignment:
Q  74 tatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaata 123  Q
    ||||||||||| |||||||| ||||||| |||||||| ||| ||||||||    
T  12436993 tatcaaaatttcaaaatagttattgattgtgcattccattaatcaaaata 12436944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 34827087 - 34827054
Alignment:
Q  67 ctcaatgtatcaaaattttaaaatagtcattgat 100  Q
    |||||||||||||||||||||||||||| |||||    
T  34827087 ctcaatgtatcaaaattttaaaatagtctttgat 34827054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 35684945 - 35684888
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||||||||||| | |||||||||  ||||| |||| | ||||||||||||||||    
T  35684945 tcaatgtatcaaaatctcaaaatagtccatgattgtgcagttcgttagtcaaaatagt 35684888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 6217701 - 6217642
Alignment:
Q  66 cctcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||||||||||||||| |||||||||  |||||||||| | ||||||||||||||||    
T  6217701 cctcaatgtatcaaaatttcaaaatagtccatgattatgcacttcgttagtcaaaatagt 6217642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 34034884 - 34034838
Alignment:
Q  79 aaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||    
T  34034884 aaattataaaatagtcattgattatgcatttcgttagtcaaaatagt 34034838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 23159079 - 23159136
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||||||||||||||||||||||  |||||| |||||| ||||||| ||||||||    
T  23159079 tcaatgtatcaaaattttaaaatagtatttgattgtgcatttcgttagtaaaaatagt 23159136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 3709634 - 3709598
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatg 104  Q
    ||||| |||||||||||||||||||||||||||||||    
T  3709634 tcaatatatcaaaattttaaaatagtcattgattatg 3709598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 8407250 - 8407214
Alignment:
Q  70 aatgtatcaaaattttaaaatagtcattgattatgca 106  Q
    |||||||||||||||||||||||| ||||||||||||    
T  8407250 aatgtatcaaaattttaaaatagttattgattatgca 8407214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 17676577 - 17676635
Alignment:
Q  67 ctcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||||||||||||| |||||||||  |||||| |||| || |||||||||| ||||    
T  17676577 ctcaatgtatcaaaattctaaaatagttcttgattgtgcactctgttagtcaaagtagt 17676635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 28503836 - 28503882
Alignment:
Q  79 aaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    |||||||||||||||| || ||| ||||||| |||||||||||||||    
T  28503836 aaattttaaaatagtctttaattgtgcattctgttagtcaaaatagt 28503882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 11498084 - 11498047
Alignment:
Q  66 cctcaatgtatcaaaattttaaaatagtcattgattat 103  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  11498084 cctcaatgtatcaaaattttaaaatagtatttgattat 11498047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 11505440 - 11505403
Alignment:
Q  66 cctcaatgtatcaaaattttaaaatagtcattgattat 103  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  11505440 cctcaatgtatcaaaattttaaaatagtatttgattat 11505403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 11512834 - 11512797
Alignment:
Q  66 cctcaatgtatcaaaattttaaaatagtcattgattat 103  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  11512834 cctcaatgtatcaaaattttaaaatagtatttgattat 11512797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 11520210 - 11520173
Alignment:
Q  66 cctcaatgtatcaaaattttaaaatagtcattgattat 103  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  11520210 cctcaatgtatcaaaattttaaaatagtatttgattat 11520173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 11527618 - 11527581
Alignment:
Q  66 cctcaatgtatcaaaattttaaaatagtcattgattat 103  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  11527618 cctcaatgtatcaaaattttaaaatagtatttgattat 11527581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 11535024 - 11534987
Alignment:
Q  66 cctcaatgtatcaaaattttaaaatagtcattgattat 103  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  11535024 cctcaatgtatcaaaattttaaaatagtatttgattat 11534987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 33598390 - 33598357
Alignment:
Q  70 aatgtatcaaaattttaaaatagtcattgattat 103  Q
    ||||||||||||||||||||||||| ||||||||    
T  33598390 aatgtatcaaaattttaaaatagtcgttgattat 33598357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 35293866 - 35293809
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||| |||| |||||| |||||||||| ||| ||||||||  |||||||||||||||    
T  35293866 tcaatctatcgaaatttcaaaatagtcactgagtatgcattgtgttagtcaaaatagt 35293809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 6645712 - 6645748
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatg 104  Q
    ||||||||||||||||||||||||||| || ||||||    
T  6645712 tcaatgtatcaaaattttaaaatagtctttaattatg 6645748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 9577106 - 9577142
Alignment:
Q  70 aatgtatcaaaattttaaaatagtcattgattatgca 106  Q
    |||||||| |||||||||||||||||||| |||||||    
T  9577106 aatgtatcgaaattttaaaatagtcattgtttatgca 9577142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 28504059 - 28504003
Alignment:
Q  65 tcctcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaa 121  Q
    ||||||| ||||| ||| || ||||||||||||| ||||||| | ||||||||||||    
T  28504059 tcctcaaggtatctaaaattcaaaatagtcattgtttatgcactacgttagtcaaaa 28504003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 29926941 - 29926887
Alignment:
Q  71 atgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||||||||||||||||||||| ||||| |||||| | ||||||||||||||    
T  29926941 atgtatcaaaattttaaaatagtcaatgattgtgcatttcattagtcaaaatagt 29926887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 34883946 - 34884005
Alignment:
Q  66 cctcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    |||||||||||||||||||||||||||||  | ||| |||| || |||||||||||||||    
T  34883946 cctcaatgtatcaaaattttaaaatagtctctaattgtgcactctgttagtcaaaatagt 34884005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 6923757 - 6923809
Alignment:
Q  71 atgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaata 123  Q
    |||||||||||||||||||||||| |||||| |||| |||| ||||| |||||    
T  6923757 atgtatcaaaattttaaaatagtccttgattgtgcactccgctagtccaaata 6923809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 2687209 - 2687158
Alignment:
Q  74 tatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||||||||||||||||| |||||| || |||  |||||||||||||||    
T  2687209 tatcaaaattttaaaatagtctttgattttgtattatgttagtcaaaatagt 2687158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 40124316 - 40124371
Alignment:
Q  70 aatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    |||||||| |||||||||||| |||  ||||| |||| ||||||||||||||||||    
T  40124316 aatgtatcgaaattttaaaatggtctctgattgtgcactccgttagtcaaaatagt 40124371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 101
Target Start/End: Original strand, 1090195 - 1090225
Alignment:
Q  71 atgtatcaaaattttaaaatagtcattgatt 101  Q
    |||||||||||||||||||||||||||||||    
T  1090195 atgtatcaaaattttaaaatagtcattgatt 1090225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 5710012 - 5709963
Alignment:
Q  76 tcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||||||||||||||  ||||||||||||| |||| || ||||||||    
T  5710012 tcaaaattttaaaatagtatttgattatgcatttcgtttgtgaaaatagt 5709963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 19206556 - 19206503
Alignment:
Q  70 aatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaata 123  Q
    ||||||||||||||||||||||||   |||||||||| |  |||||||||||||    
T  19206556 aatgtatcaaaattttaaaatagtttctgattatgcactttgttagtcaaaata 19206503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 20966264 - 20966215
Alignment:
Q  76 tcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||||||||||||||| |||||| |||| |  |||||||||||||||    
T  20966264 tcaaaattttaaaatagtctttgattgtgcactttgttagtcaaaatagt 20966215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 6923904 - 6923868
Alignment:
Q  65 tcctcaatgtatcaaaattttaaaatagtcattgatt 101  Q
    |||||||| |||||||||||||||||||| |||||||    
T  6923904 tcctcaatatatcaaaattttaaaatagttattgatt 6923868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 28779733 - 28779785
Alignment:
Q  71 atgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaata 123  Q
    |||||||||||||||||||||||| |||||| |||| | || ||||| |||||    
T  28779733 atgtatcaaaattttaaaatagtccttgattgtgcacttcgctagtccaaata 28779785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 28779880 - 28779844
Alignment:
Q  65 tcctcaatgtatcaaaattttaaaatagtcattgatt 101  Q
    |||||||| |||||||||||||||||||| |||||||    
T  28779880 tcctcaatatatcaaaattttaaaatagttattgatt 28779844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 19303617 - 19303560
Alignment:
Q  66 cctcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaata 123  Q
    |||||||||||||||||||||||||| |||||||||||  | | ||||||||||||||    
T  19303617 cctcaatgtatcaaaattttaaaatactcattgattattaacttcgttagtcaaaata 19303560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 23474557 - 23474614
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    |||||||||||||||||||||||||| ||||||| |||| | ||||| ||||||||||    
T  23474557 tcaatgtatcaaaattttaaaatagttattgattgtgcacttcgttaatcaaaatagt 23474614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 30604368 - 30604314
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaat 122  Q
    |||| |||||||||||| ||||||||| ||||||||||| | |||||||||||||    
T  30604368 tcaaagtatcaaaatttaaaaatagtctttgattatgcaattcgttagtcaaaat 30604314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 23441503 - 23441560
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    |||||||||| ||||||||||||||| ||||||| |||| | ||||| ||||||||||    
T  23441503 tcaatgtatcgaaattttaaaatagttattgattgtgcacttcgttaatcaaaatagt 23441560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 37502223 - 37502276
Alignment:
Q  74 tatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagtac 127  Q
    |||||||||||||||||| ||| ||||||||||||  |||| ||||||||||||    
T  37502223 tatcaaaattttaaaataatcaatgattatgcattatgttaatcaaaatagtac 37502276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 193
Target Start/End: Complemental strand, 32996560 - 32996432
Alignment:
Q  66 cctcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagtacccgacg-taaaatgatccctcaatgttgtcaataactc 164  Q
    |||||||| ||||||||| ||||||||||  ||||| |||| |  |||| ||||||||||   ||||| |||||| ||||| |||| ||  || ||||||    
T  32996560 cctcaatgcatcaaaattctaaaatagtctctgattgtgcactttgttaatcaaaatagtctacgacgctaaaataatcccccaatattcacactaactc 32996461  T
Q  165 ttttcttatatgaactgatataacaataa 193  Q
    ||||| |||||| ||||| || |||||||    
T  32996460 ttttcatatatggactgaaatgacaataa 32996432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 38838702 - 38838646
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatag 124  Q
    ||||||||| |||||||||||||||||  ||||| ||||||  ||||||||||||||    
T  38838702 tcaatgtattaaaattttaaaatagtctctgattttgcattttgttagtcaaaatag 38838646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 10228752 - 10228807
Alignment:
Q  70 aatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    |||||||| |||||| ||||||||| |||||| |||| | ||||||||||||||||    
T  10228752 aatgtatcgaaatttcaaaatagtctttgattgtgcaattcgttagtcaaaatagt 10228807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 11459049 - 11459010
Alignment:
Q  86 aaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  11459049 aaaatagtccttgattgtgcattccgttagtcaaaatagt 11459010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 14669554 - 14669496
Alignment:
Q  67 ctcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||||||||||||| |||||||||  |||||| |||| || |||||||||| ||||    
T  14669554 ctcaatgtatcaaaattctaaaatagttcttgattgtgcactctgttagtcaaagtagt 14669496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 5358257 - 5358314
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    |||||||||||||||||||||||||||  ||||| || | ||  ||||||||||||||    
T  5358257 tcaatgtatcaaaattttaaaatagtctctgattgtgtactctattagtcaaaatagt 5358314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 23457871 - 23457814
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    |||||||||| ||||||||||||||| ||||||| |||| |  |||| ||||||||||    
T  23457871 tcaatgtatcgaaattttaaaatagttattgattgtgcactttgttaatcaaaatagt 23457814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 5362492 - 5362460
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgat 100  Q
    ||||||||||||||||||||||||||| |||||    
T  5362492 tcaatgtatcaaaattttaaaatagtctttgat 5362460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 5429556 - 5429528
Alignment:
Q  65 tcctcaatgtatcaaaattttaaaatagt 93  Q
    |||||||||||||||||||||||||||||    
T  5429556 tcctcaatgtatcaaaattttaaaatagt 5429528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 23920279 - 23920247
Alignment:
Q  188 caataagtaagtatattgaggactgatatgaca 220  Q
    ||||||||||||||||| |||||||||||||||    
T  23920279 caataagtaagtatattaaggactgatatgaca 23920247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 45539902 - 45539982
Alignment:
Q  143 ccctcaatgttgtcaataactcttttcttatatgaactgatataacaataagtaagtatattgaggactgatatgacagtg 223  Q
    ||||| ||| || ||| |||||| |||| ||| | ||| |||||||||||||| ||||||||||  | |||||||||||||    
T  45539902 ccctctatgctgacaaaaactctcttctcatagggacttatataacaataagtgagtatattgacaaatgatatgacagtg 45539982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 6246 - 6303
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||||||||||||||||||||||||| | |||| || | |||||| |||||||||||    
T  6246 tcaatgtatcaaaattttaaaatagtcctagattgtgaactccgttggtcaaaatagt 6303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 27230 - 27175
Alignment:
Q  166 tttcttatatgaactgatataacaataagtaagtatattg-aggactgatatgaca 220  Q
    |||| |||||||||||| |||||||||| ||||||||||| | |||||||||||||    
T  27230 tttcatatatgaactgaaataacaataaataagtatattgaatgactgatatgaca 27175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 27093 - 27150
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    ||||| |||||||||||||||||| || |||||| |||| | ||||| ||||||||||    
T  27093 tcaatttatcaaaattttaaaataatctttgattgtgcacttcgttaatcaaaatagt 27150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 1627 - 1684
Alignment:
Q  68 tcaatgtatcaaaattttaaaatagtcattgattatgcattccgttagtcaaaatagt 125  Q
    |||||||||||||||||||||||| |  |||||| |||| | |||| |||||||||||    
T  1627 tcaatgtatcaaaattttaaaataatttttgattgtgcacttcgttggtcaaaatagt 1684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 6719 times since January 2019
Visitors: 5770