View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0780_low_6 (Length: 464)
Name: NF0780_low_6
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 30 - 435
Target Start/End: Original strand, 30418296 - 30418707
Alignment:
| Q |
30 |
caaatgaagctaaatgattttggaatcgtgtgtatgtaccatcagcctttccttaaaaaacattcatccttatcccttgacctagtactcctactaac-t |
128 |
Q |
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| T |
30418296 |
caaatgaagctaaatgattttggaatcgtgtgtatgtaccattagcctttccttaaaaaacattcatccttatcccttgacctagtactcctactaacat |
30418395 |
T |
|
| Q |
129 |
ca-atgagatggacatcatcatagagtcactcaccatccaaaccccc-aacctccacacacgccaccttatctggaactttccgactgaggtaccagaaa |
226 |
Q |
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| T |
30418396 |
cacatgatatat-cattatcatagagtcactcaccatccaaaccccccaacctccacacacgccaccttatttggaactttccgactgaggtaccagaaa |
30418494 |
T |
|
| Q |
227 |
attcaaaatcagaccgtttttctagatcctggcactct----ttccgttgcccttttcaaccacccacgagtcaaaatcgattcgctttaccactagatg |
322 |
Q |
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|||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
30418495 |
tttcaaaatcaaaccgtttttctagatcctagcactccctccttccgttgcccttttcaaccacccacgagtcaaaattgatccgctttaccactagatg |
30418594 |
T |
|
| Q |
323 |
ccgatgaagagtggtcctccttaccaaagatgtgatgatattgattctcgccaccatcacactattcccagccaccgtttcttcatcaaaatctgaaaat |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
30418595 |
ccgatgaagagtggtcctccttaccaaagatgtgatgatattgattctcgccaccatcacactatttccagccaccgtctcttcatcaaaatctgaaaat |
30418694 |
T |
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| Q |
423 |
ttcaagttgttct |
435 |
Q |
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|||||||||||| |
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| T |
30418695 |
gtcaagttgttct |
30418707 |
T |
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