View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0780_low_64 (Length: 269)
Name: NF0780_low_64
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_low_64 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 30 - 257
Target Start/End: Complemental strand, 2106841 - 2106616
Alignment:
| Q |
30 |
cataaacctttcaactgttggaaaacaataacatgttggtaaattgtttagaaaagaaaaatgtataaaaaatgaagagtagcaatgagtaaatcttaac |
129 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2106841 |
cataaacctttcaactgttgcaaaacaataacatgttggtaaattgtttagaaaagaaaaatgtataaaaaatgaagagtagcaatgagtaaatcttaac |
2106742 |
T |
|
| Q |
130 |
aatatctaaccaattaggaaaggatataaaactaaatgaattcaaaggagccnnnnnnnnnnnnnnnnnnaagaaagggatagttccatagttgttttta |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2106741 |
aatatctaaccaattaggaaaggatataaaactaaatgaattcaaaggagcc--ttttttttttttttttaagaaagggatagttccatagttgttttta |
2106644 |
T |
|
| Q |
230 |
acaaagaaatcatgtcatcgcttagaat |
257 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
2106643 |
acaaagaaatcatgtcatcgcttagaat |
2106616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 30 - 173
Target Start/End: Complemental strand, 2098383 - 2098239
Alignment:
| Q |
30 |
cataaacctttcaactgttggaaaacaataacat--gttggtaaattgtttagaaaagaaaaatgtataaaaaatgaagagtagcaatgagtaaatctta |
127 |
Q |
| |
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||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
2098383 |
cataaacctttcagctgttgcaaaacaataacatatgttggtaaattgtttagaaaagaaaaatgtataaacaatgaagagtagtggtgagtaaatctta |
2098284 |
T |
|
| Q |
128 |
acaatatctaaccaattaggaaaggatataaaactaaatgaattca |
173 |
Q |
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|||||||||||||||||||| ||| |||| |||||||||||||||| |
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| T |
2098283 |
acaatatctaaccaattagg-aagaatatgaaactaaatgaattca |
2098239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 2047926 - 2047833
Alignment:
| Q |
88 |
aaatgtataaaaaatgaagagtagcaatgagtaaatcttaacaatatctaaccaattaggaaaggatata-aaactaaatgaattcaaaggagcc |
181 |
Q |
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|||||||||||||||| | |||| |||||||||||| ||||||||||||||||||||||| ||| ||||| || ||||||||| |||||||||| |
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| T |
2047926 |
aaatgtataaaaaatggaaagtaacaatgagtaaatattaacaatatctaaccaattagg-aagaatatattaattaaatgaatccaaaggagcc |
2047833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 2098212 - 2098162
Alignment:
| Q |
206 |
gggatagttccatagttgtttttaacaaagaaatcatgtcatcgcttagaat |
257 |
Q |
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||||||||||||| |||||||| |||||||||||| |||||||||| ||||| |
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| T |
2098212 |
gggatagttccatggttgtttt-aacaaagaaatcgtgtcatcgctcagaat |
2098162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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