View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0780_low_7 (Length: 454)
Name: NF0780_low_7
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 30 - 434
Target Start/End: Original strand, 28987955 - 28988356
Alignment:
| Q |
30 |
aacctgtgtcagcgtgtggttacattcaattacttccattttctgaaattagtagctgtgtcagtgtcagtgtttcataggtagtgagttgttactagta |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28987955 |
aacctgtgtcagcgtgtggttacattcaattacttccattttctaaaattagtagctgtgtcagtgtcagtgtttcataggtagtgagttgttactagta |
28988054 |
T |
|
| Q |
130 |
agttctgaagcacggacacctcttagattaggtgtttcctgtatccaaaacgcaccggtgtctgacactgacacaacacctacacataaatcacctgtgt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28988055 |
agttctgaagcacggacacctcttagattaggtgtttcctgtgtccaaaacgcaccggtgtctgacactgacacaacacctacacataaatcacctgtgt |
28988154 |
T |
|
| Q |
230 |
cgacgtatccgtgtcagtgtcgtgtcggtgtctgcttcgtagctagtaaagtctaagttagaattttggagctttaaataattgtagtgtggtgggggaa |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28988155 |
cgacgtatccgtgtcagtgtcgtgtcggtgtctgcttcgtagctagtaaagtataagttagaattttggagctttaaataattgtagtgtggtgggggaa |
28988254 |
T |
|
| Q |
330 |
aaataccttttcttctttcttttctctgaggttgtgtacattgattatgttaatgatgcttccgggttctgattttgagccctgttattttgtggctgat |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28988255 |
aaataccttttcttctttcttttctctgaggttgtgtac---gattatgttaatgatgcttctgggttctgattttgagccctgttattttgtggctgat |
28988351 |
T |
|
| Q |
430 |
gatgt |
434 |
Q |
| |
|
||||| |
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|
| T |
28988352 |
gatgt |
28988356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 2468485 - 2468521
Alignment:
| Q |
44 |
tgtggttacattcaattacttccattttctgaaatta |
80 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||| |
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|
| T |
2468485 |
tgtggttacattcaattacttccattttcttaaatta |
2468521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 27131685 - 27131721
Alignment:
| Q |
44 |
tgtggttacattcaattacttccattttctgaaatta |
80 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |
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|
| T |
27131685 |
tgtggttacattcaattacttccattttcttaaatta |
27131721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 9018882 - 9018918
Alignment:
| Q |
44 |
tgtggttacattcaattacttccattttctgaaatta |
80 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||| |
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|
| T |
9018882 |
tgtggttacattcaattactttcattttctcaaatta |
9018918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 255
Target Start/End: Original strand, 44572654 - 44572683
Alignment:
| Q |
226 |
gtgtcgacgtatccgtgtcagtgtcgtgtc |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
44572654 |
gtgtcgacgtatccgtgtcagtgtcgtgtc |
44572683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 73
Target Start/End: Original strand, 38685311 - 38685340
Alignment:
| Q |
44 |
tgtggttacattcaattacttccattttct |
73 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
38685311 |
tgtggttacattcaattacttccattttct |
38685340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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