View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0780_low_72 (Length: 262)
Name: NF0780_low_72
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_low_72 |
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| [»] scaffold1995 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 24 - 222
Target Start/End: Complemental strand, 38546342 - 38546144
Alignment:
| Q |
24 |
aatatactcataaattgatcaagtgaagttgatatgtttagttcaaattttggactaaatacatatttcttatatatttaatttaatacatgcatgaggg |
123 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38546342 |
aatatactcataaattgatcaagtgaagttgatatatttagttcaaattttggactaaatacatatttcttatatatttaatttaatacatgcatgaggg |
38546243 |
T |
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| Q |
124 |
aataacatttactcaaaagtacatttgtaaacgttaatcacacacctatttgttttgttgcttcatcgtttgaaacagctatgtatcccatccaattcg |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38546242 |
aataacatttactcaaaagtacatttgtaaacgttaatcacacacctatttgttttgttgcttcatcgtttgaaacagctatgtatcccatccaattcg |
38546144 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 24 - 222
Target Start/End: Complemental strand, 38552746 - 38552543
Alignment:
| Q |
24 |
aatatactcataaattgatcaagtgaagttgatatgtttagttcaaattttggactaaatacat---atttctt-----atatatttaatttaatacatg |
115 |
Q |
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||||||| || |||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||| | ||||| | || | || |
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| T |
38552746 |
aatatacacaaaaattgatcaagtgaagttgatatatttagtt---attttggactaaatacatcaactttctttgaccaattatttcttatatttgata |
38552650 |
T |
|
| Q |
116 |
catgagggaataacatttactcaaaagtacatttgtaaacgttaatcacacacctatttgttttgttgcttcatcgtttgaaacagctatgtatcccatc |
215 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
38552649 |
catgagggagtaacatttactcataagtacatttgtaaacgttaatcacacacctatttgttttgttgtttcatcgtttgaaacggctatgtatcccatc |
38552550 |
T |
|
| Q |
216 |
caattcg |
222 |
Q |
| |
|
||||||| |
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| T |
38552549 |
caattcg |
38552543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1995 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold1995
Description:
Target: scaffold1995; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 24 - 222
Target Start/End: Complemental strand, 409 - 206
Alignment:
| Q |
24 |
aatatactcataaattgatcaagtgaagttgatatgtttagttcaaattttggactaaatacat---atttctt-----atatatttaatttaatacatg |
115 |
Q |
| |
|
||||||| || |||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||| | ||||| | || | || |
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| T |
409 |
aatatacacaaaaattgatcaagtgaagttgatatatttagtt---attttggactaaatacatcaactttctttgaccaattatttcttatatttgata |
313 |
T |
|
| Q |
116 |
catgagggaataacatttactcaaaagtacatttgtaaacgttaatcacacacctatttgttttgttgcttcatcgtttgaaacagctatgtatcccatc |
215 |
Q |
| |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
312 |
catgagggagtaacatttactcataagtacatttgtaaacgttaatcacacacctatttgttttgttgtttcatcgtttgaaacggctatgtatcccatc |
213 |
T |
|
| Q |
216 |
caattcg |
222 |
Q |
| |
|
||||||| |
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|
| T |
212 |
caattcg |
206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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