View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0780_low_77 (Length: 251)
Name: NF0780_low_77
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_low_77 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 3110275 - 3110463
Alignment:
| Q |
1 |
aagaacatgattccctttacgtctaataggatgaagaagaccactcacattatgctccacaatttcctttgttcccccaccatctgttcctagaaccgga |
100 |
Q |
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| T |
3110275 |
aagaacatgattccctttacgtctaataggatgaagaagaccactcacattatgctccacaatttcctttgtccccccaccatctgttcctagaaccgga |
3110374 |
T |
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| Q |
101 |
agaccaaatgccattgcttctatcgtcacacgtccaaaggtttctcccaatccctgagagttaatcacataaacatcagcagctgagta |
189 |
Q |
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| T |
3110375 |
agaccaaatgccattgcttctatcgtcacacgtccaaaggtttctcccaatccctgagagttaatgacataaacatcagcagctgagta |
3110463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 5 - 156
Target Start/End: Complemental strand, 26271506 - 26271355
Alignment:
| Q |
5 |
acatgattccctttacgtctaataggatgaagaagaccactcacattatgctccacaatttcctttgttcccccaccatctgttcctagaaccggaagac |
104 |
Q |
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| T |
26271506 |
acatgattccctttacgtctaataggatgaagaagaccactcacattatgctccacaatttcctttgttcccccaccatctgttcctagaaccggaagac |
26271407 |
T |
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| Q |
105 |
caaatgccattgcttctatcgtcacacgtccaaaggtttctcccaatccctg |
156 |
Q |
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| T |
26271406 |
caaatgccattgcttctattgtcacacgtccaaaggtttctcccaatccctg |
26271355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 3110494 - 3110563
Alignment:
| Q |
153 |
cctgagagttaatcacataaacatcagcagctgagtaaagtgaggcaacatgtgttgtcgatggagtcca |
222 |
Q |
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| T |
3110494 |
cctgagaattaatgacataaacatcagcagctgagtaaagtgaggcaacatgtgttgtcgatggagtcca |
3110563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 26271280 - 26271211
Alignment:
| Q |
153 |
cctgagagttaatcacataaacatcagcagctgagtaaagtgaggcaacatgtgttgtcgatggagtcca |
222 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
26271280 |
cctgagagttaatgacataaacatcagcagctgagtaaagtgaggcaacatgtgttgtggctggagtcca |
26271211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 44064266 - 44064205
Alignment:
| Q |
95 |
accggaagaccaaatgccattgcttctatcgtcacacgtccaaaggtttctcccaatccctg |
156 |
Q |
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| T |
44064266 |
accggaagaccaaatgccattgcttctatagtcacccgtccaaatgtctctccaagtccctg |
44064205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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