View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0780_low_80 (Length: 234)
Name: NF0780_low_80
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_low_80 |
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| [»] chr6 (8 HSPs) |
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| [»] scaffold0196 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 11740263 - 11740496
Alignment:
| Q |
1 |
ccactgcctttgggataaggattctataatttttgtaaacaaaagtgagatggctaatacataactttcatatttggaactttcattatcctcggccgcc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11740263 |
ccactgcctttgggataaggattctataatttttgtaaacaaaagtgagatggctaatacataactttcatatttggaactttcattatcctcggccgcc |
11740362 |
T |
|
| Q |
101 |
aaaataaaggcattcaaaattataggacaacaagaaagtgcgagtaccttgagtaatgcaaagaatcctgatatcaaaatttctctacgatggcacaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11740363 |
aaaataaaggcattcaaaattataggacaacaagaaagtgcgagtaccttgagtaatgcaaagaatcctgatatcaaaatttctctacgatggcacaaaa |
11740462 |
T |
|
| Q |
201 |
ttattgtccgtaaaaccaacgaccgtgatgatga |
234 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
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|
| T |
11740463 |
ttattgtccgtaaaaccaacgaccatgatgatga |
11740496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 209
Target Start/End: Original strand, 12094495 - 12094699
Alignment:
| Q |
5 |
tgcctttgggataaggattctataatttttgtaaacaaaagtgagatggctaatacataactttcatatttggaactttcattatcctcggccgccaaaa |
104 |
Q |
| |
|
|||||||| |||| ||| |||| ||| || ||||||||||||||||||| || | ||||| |||| ||||| |||||| |||| |||| ||| ||| | |
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|
| T |
12094495 |
tgcctttgagatagggactctaaaatcttgataaacaaaagtgagatggccaaaaaataaccttcaaatttgaaactttgattaccctcagccaccagta |
12094594 |
T |
|
| Q |
105 |
taaaggcattcaaaattataggacaacaagaaagtgcgagtaccttgagtaatgcaaagaatcctgatatcaaaatttctctacgatggcacaaaattat |
204 |
Q |
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|||||||||||||||||||||||||| ||||||| | |||||||||||| |||||||| ||||| ||||||||||| ||||| || |||||||||| || |
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| T |
12094595 |
taaaggcattcaaaattataggacaagaagaaagagtgagtaccttgagaaatgcaaaaaatccagatatcaaaatctctctccggtggcacaaaacgat |
12094694 |
T |
|
| Q |
205 |
tgtcc |
209 |
Q |
| |
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||||| |
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| T |
12094695 |
tgtcc |
12094699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 209
Target Start/End: Complemental strand, 11755440 - 11755236
Alignment:
| Q |
5 |
tgcctttgggataaggattctataatttttgtaaacaaaagtgagatggctaatacataactttcatatttggaactttcattatcctcggccgccaaaa |
104 |
Q |
| |
|
|||||||| |||| ||| |||| ||| || |||||||||||||||| || || | |||| |||| ||||| |||||| |||| |||| ||| ||| | |
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| T |
11755440 |
tgcctttgagatagggactctaaaatcttgataaacaaaagtgagattgccaaaaagtaaccttcaaatttgaaactttgattaccctcagccaccagta |
11755341 |
T |
|
| Q |
105 |
taaaggcattcaaaattataggacaacaagaaagtgcgagtaccttgagtaatgcaaagaatcctgatatcaaaatttctctacgatggcacaaaattat |
204 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||| | |||||||||||| |||||||||||||| ||||||||||| ||||| || ||||| |||| || |
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| T |
11755340 |
taaaggcattcaatattataggacaagaagaaagagtgagtaccttgagaaatgcaaagaatccagatatcaaaatctctctccggtggcaaaaaacaat |
11755241 |
T |
|
| Q |
205 |
tgtcc |
209 |
Q |
| |
|
||||| |
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|
| T |
11755240 |
tgtcc |
11755236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 217
Target Start/End: Complemental strand, 11617755 - 11617588
Alignment:
| Q |
50 |
atggctaatacataactttcatatttggaactttcattatcctcggccgccaaaataaaggcattcaaaattataggacaacaagaaagtgcgagtacct |
149 |
Q |
| |
|
|||||||||| ||||| |||||||||| ||||||||||| | || || |||| ||||| |||||| ||| ||||||| | |||| |||| |||||||| |
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| T |
11617755 |
atggctaataaataaccttcatatttgaaactttcattaccttcagcaaccaatataaattcattcagaatcataggaccagaagatagtgtgagtacct |
11617656 |
T |
|
| Q |
150 |
tgagtaatgcaaagaatcctgatatcaaaatttctctacgatggcacaaaattattgtccgtaaaacc |
217 |
Q |
| |
|
|||| || || |||||||||| ||||||||| ||||| ||||||||||||||||||| ||||||| |
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|
| T |
11617655 |
tgagaaaagcgaagaatcctgttatcaaaatctctctcttgtggcacaaaattattgtccataaaacc |
11617588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 11632435 - 11632644
Alignment:
| Q |
8 |
ctttgggataaggattctataatttttgtaaacaaaagtgagatggctaatacataactttcatatttggaactttcattatcctcggccgccaaaataa |
107 |
Q |
| |
|
||||| |||| ||||||||| |||||| ||| || ||||| | ||| |||||||||| |||||||||| ||||||| ||| ||||||| |||| || | |
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| T |
11632435 |
ctttgtgatagggattctatgatttttataacaaagagtgaaacggccaatacataaccttcatatttgaaactttcgttaccctcggcaaccaatatga |
11632534 |
T |
|
| Q |
108 |
aggcattcaaaattataggacaacaagaaagtgcgagtaccttgagtaatgcaaagaatcctgatatcaaaatttctctacgatggcacaaaattattgt |
207 |
Q |
| |
|
||||||| | || || |||| | |||| || ||||||||||| | || ||||||||||| | || |||||| ||||| | ||||||||||| || || |
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| T |
11632535 |
aggcattaagaagtagaggagtagaagatagagcgagtaccttaaacaacgcaaagaatccggttaccaaaatctctctccaatggcacaaaaagatggt |
11632634 |
T |
|
| Q |
208 |
ccgtaaaacc |
217 |
Q |
| |
|
|| ||||||| |
|
|
| T |
11632635 |
ccataaaacc |
11632644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 11662607 - 11662404
Alignment:
| Q |
14 |
gataaggattctataatttttgtaaacaaaagtgagatggctaatacataactttcatatttggaactttcattatcctcggccgccaaaataaaggcat |
113 |
Q |
| |
|
|||| ||||||||| || ||| | || |||||||| ||||| |||| ||||| |||||||||| |||||||||| |||| | |||| ||||| |||| |
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| T |
11662607 |
gatatggattctatgatctttatgaagaaaagtgatatggccaatatataaccttcatatttgaaactttcatttccctcagaaaccaatataaaagcat |
11662508 |
T |
|
| Q |
114 |
tcaaaattataggacaacaagaaagtgcgagtaccttgagtaatgcaaagaatcctgatatcaaaatttctctacgatggcacaaaattattgtccgtaa |
213 |
Q |
| |
|
| | || || ||| | |||||| | || ||||||||||| || ||||||||||||| ||| ||||| ||||| || |||||| || |||||||| ||| |
|
|
| T |
11662507 |
taagaagtaaagggccacaagatatagcaagtaccttgagcaaagcaaagaatcctgttattaaaatctctcttcggtggcaccgaactattgtccataa |
11662408 |
T |
|
| Q |
214 |
aacc |
217 |
Q |
| |
|
|||| |
|
|
| T |
11662407 |
aacc |
11662404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 11674462 - 11674681
Alignment:
| Q |
14 |
gataaggattctataatttttgtaaacaaaagtgagatggctaatacataactttcatatttggaactttcattatcctcggccgccaaaataaaggcat |
113 |
Q |
| |
|
||||||||||||| || ||| |||| |||||||| || || |||||||||| |||||||| |||||| ||| | || || |||| ||||| ||| |
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|
| T |
11674462 |
gataaggattctaggatctttataaagaaaagtgatattgccaatacataaccttcatattcaaaacttttattgccttcagcaaccaatataaactcat |
11674561 |
T |
|
| Q |
114 |
tcaaaattataggacaacaagaaagtgcgagtaccttgagtaatgcaaagaatcctgatatcaaaatttctctacgatggcacaaaattattgtccgtaa |
213 |
Q |
| |
|
||| || || ||||| | |||| || | |||||||||||| || ||||||||||| | ||||||||| ||||| | |||||| ||||||||||| ||| |
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|
| T |
11674562 |
tcagaagtaaaggaccagaagatagagtgagtaccttgagcaaagcaaagaatccggttatcaaaatctctctttggtggcacgcaattattgtccataa |
11674661 |
T |
|
| Q |
214 |
aaccaacgaccgtgatgatg |
233 |
Q |
| |
|
||| |||| ||||||||| |
|
|
| T |
11674662 |
aacggacgaatgtgatgatg |
11674681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 209
Target Start/End: Original strand, 11711039 - 11711181
Alignment:
| Q |
67 |
ttcatatttggaactttcattatcctcggccgccaaaataaaggcattcaaaattataggacaacaagaaagtgcgagtaccttgagtaatgcaaagaat |
166 |
Q |
| |
|
|||||||||| ||||||||||| | || | | || ||||| ||||||| || || ||| | |||||| | ||| ||||||||||| || || |||||| |
|
|
| T |
11711039 |
ttcatatttgaaactttcattaccttcagaaactaatataaacgcattcagaagtagagggccacaagatattgcaagtaccttgagcaaagcgaagaat |
11711138 |
T |
|
| Q |
167 |
cctgatatcaaaatttctctacgatggcacaaaattattgtcc |
209 |
Q |
| |
|
|| | ||||| ||| ||||| | |||||||||||||||||||| |
|
|
| T |
11711139 |
cccgttatcagaatatctctcctatggcacaaaattattgtcc |
11711181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 12149 - 11942
Alignment:
| Q |
8 |
ctttgggataaggattctataatttttgtaaacaaaagtgagatggctaatacataactttcatatttggaactttcattatcctcggccgccaaaataa |
107 |
Q |
| |
|
||||| |||| ||||||||| |||||| |||| || ||||| |||||||||| ||||| |||||||||| ||||||||||| |||| || ||| |||| |
|
|
| T |
12149 |
ctttgtgatagggattctatgatttttataaagaagagtgacatggctaatatataaccttcatatttgaaactttcattaccctcagcaaccattataa |
12050 |
T |
|
| Q |
108 |
aggcattcaaaattataggacaacaagaaagtgcgagtaccttgagtaatgcaaagaatcctgatatcaaaatttctctacgatggcacaaaattattgt |
207 |
Q |
| |
|
|||| |||| || || |||| | |||| || ||||||||||||| || ||||| || || | || |||||||||||| | ||||| ||||| ||||| |
|
|
| T |
12049 |
aggcgttcagaagtagaggagtaaaagatagagcgagtaccttgaaaaaagcaaacaacccggttaccaaaatttctctctggtggcataaaatgattgt |
11950 |
T |
|
| Q |
208 |
ccgtaaaa |
215 |
Q |
| |
|
|| ||||| |
|
|
| T |
11949 |
ccataaaa |
11942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 44811205 - 44811020
Alignment:
| Q |
1 |
ccactgcctttgggataaggattctataatttttgtaaacaaaagtgagatggctaatacataactttcatatttggaactttcattatcctcggccgcc |
100 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| |||| ||||||| ||||| |||||| ||| |||||||||| |||| ||| | | ||| | | |
|
|
| T |
44811205 |
ccactgcctttgagatagagattctataatttttataaagaaaagtgctatggccaatacaaaaccttcatatttgaaactctcaaaaccttcgacgact |
44811106 |
T |
|
| Q |
101 |
aaaataaaggcattcaaaattataggacaacaagaaagtgcgagtaccttgagtaatgcaaagaatcctgatatcaaaatttctct |
186 |
Q |
| |
|
|| ||||||| ||||| || | || | | |||| ||||| |||||||| || |||||||||||||| ||||||||||||||||| |
|
|
| T |
44811105 |
aatataaaggaattcagaagcaatggtccagaagacagtgcaagtaccttaagcaatgcaaagaatccagatatcaaaatttctct |
44811020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 9519 - 9585
Alignment:
| Q |
143 |
agtaccttgagtaatgcaaagaatcctgatatcaaaatttctctacgatggcacaaaattattgtcc |
209 |
Q |
| |
|
||||||||||| || ||||||| ||||| ||||||||| ||||| | | ||||||||||||||||| |
|
|
| T |
9519 |
agtaccttgagcaaagcaaagagtcctgttatcaaaatctctctctggtagcacaaaattattgtcc |
9585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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