View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0780_low_89 (Length: 219)
Name: NF0780_low_89
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0780_low_89 |
 | |
|
| [»] scaffold0011 (2 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold1140 (1 HSPs) |
| | |
|
| [»] scaffold0266 (1 HSPs) |
| | |
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| [»] scaffold0302 (1 HSPs) |
| | |
|
| [»] scaffold0225 (1 HSPs) |
| | |
|
| [»] scaffold0467 (2 HSPs) |
| | |
|
| [»] scaffold0218 (1 HSPs) |
| | |
|
| [»] scaffold0462 (1 HSPs) |
| | |
|
| [»] scaffold0120 (1 HSPs) |
| | |
|
| [»] scaffold0008 (2 HSPs) |
| | |
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| [»] scaffold0465 (1 HSPs) |
| | |
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| [»] scaffold0615 (1 HSPs) |
| | |
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| [»] scaffold0162 (1 HSPs) |
| | |
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| [»] scaffold0610 (1 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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| [»] scaffold0673 (1 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 73095 - 73219
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| | |
|
|
| T |
73095 |
cggattttccgagctatggttacgggagatgaccagaaggtcagactagcgactcatatgctagccgaggaagcagagcactggtggactaacgccaaag |
73194 |
T |
|
| Q |
101 |
gcaggcttgagttgggagatgatgt |
125 |
Q |
| |
|
| |||||||||||||||| |||||| |
|
|
| T |
73195 |
gaaggcttgagttgggaggtgatgt |
73219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 77476 - 77600
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| | |
|
|
| T |
77476 |
cggattttccgagctatggttacgggagatgaccagaaggtcagactagcgactcatatgctagccgaggaagcagagcactggtggactaacgccaaag |
77575 |
T |
|
| Q |
101 |
gcaggcttgagttgggagatgatgt |
125 |
Q |
| |
|
| |||||||||||||||| |||||| |
|
|
| T |
77576 |
gaaggcttgagttgggaggtgatgt |
77600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 15000558 - 15000434
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
15000558 |
cggattttccgagctatggttacgggagatgactagaaggtcagactagcgactcatatgttagctgaggaagcagagtactggtggaccaatgccaagg |
15000459 |
T |
|
| Q |
101 |
gcaggcttgagttgggagatgatgt |
125 |
Q |
| |
|
|||||||||||||||| | |||||| |
|
|
| T |
15000458 |
gcaggcttgagttggggggtgatgt |
15000434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 7806 - 7929
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| | |
|
|
| T |
7806 |
cggattttccgagctatggttacgggagatgaccagaaggtcaaactagcgactcatatgctagctgaggaagcatagcactagtggaccaatgccaaag |
7905 |
T |
|
| Q |
101 |
gcaggcttgagttgggagatgatg |
124 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
7906 |
gcaggcttgagttgggaggtgatg |
7929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1140 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold1140
Description:
Target: scaffold1140; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 525 - 408
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| | |
|
|
| T |
525 |
cggattttccgagctatggttacgggagatgaccagaaggtcagactagcgactcatatgctagctgaggaagcagagcactgatggactaatgccaaag |
426 |
T |
|
| Q |
101 |
gcaggcttgagttgggag |
118 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
425 |
gaaggcttgagttgggag |
408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0266 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0266
Description:
Target: scaffold0266; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 6227 - 6351
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
6227 |
cggattttccgagctatggttacgggagatgaccagaaggtcagactagcgactcatatgttgactgaggaagcagagcactagtggaccaatgccaagg |
6326 |
T |
|
| Q |
101 |
gcaggcttgagttgggagatgatgt |
125 |
Q |
| |
|
| ||||||||||||||| ||||||| |
|
|
| T |
6327 |
gaaggcttgagttgggaaatgatgt |
6351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 1660355 - 1660479
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| ||||||||| ||| ||||||| |
|
|
| T |
1660355 |
cggattttccgagctatggttacgggagatgaccagaaggtcagactagcgactcatatgtttgctgaggaagcagagtactggtggatcaatgccaagg |
1660454 |
T |
|
| Q |
101 |
gcaggcttgagttgggagatgatgt |
125 |
Q |
| |
|
|||||||||||||||| | |||||| |
|
|
| T |
1660455 |
gcaggcttgagttgggcggtgatgt |
1660479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 17786966 - 17786841
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaagg-tgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaag |
99 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||| || |||||||||||| || ||||| |
|
|
| T |
17786966 |
cggattttccgagctatggttacgggaaatgaccagaaggctcagactagcgactcatatgctagctgaggaagaagggcactggtggactaatgccaaa |
17786867 |
T |
|
| Q |
100 |
ggcaggcttgagttgggagatgatgt |
125 |
Q |
| |
|
|| || |||||| |||||| |||||| |
|
|
| T |
17786866 |
ggaagacttgagatgggaggtgatgt |
17786841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 16104074 - 16103950
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagg |
100 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||| |||| ||||||||||| |||||||||||||| || ||||| | |
|
|
| T |
16104074 |
cggattttccaagctatggtgacgggagatgaccagaaggtcagactagcgactcatgtgcttgctgaggaagcggagcactggtggactaatgccaaag |
16103975 |
T |
|
| Q |
101 |
gcaggcttgagttgggagatgatgt |
125 |
Q |
| |
|
| || ||||| |||||| |||||| |
|
|
| T |
16103974 |
gaagacttgaaatgggaggtgatgt |
16103950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 18421333 - 18421209
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagg |
100 |
Q |
| |
|
|||||||||||| ||||||| ||| | |||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| || ||||| | |
|
|
| T |
18421333 |
cggattttccgatctatggtgacgagggatgaccagaaggtcagactagcgactcatatgcttgctaaggaagcagagcactggtggactaatgccaaag |
18421234 |
T |
|
| Q |
101 |
gcaggcttgagttgggagatgatgt |
125 |
Q |
| |
|
| || |||||| |||||| |||||| |
|
|
| T |
18421233 |
gaagacttgagatgggaggtgatgt |
18421209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 21412050 - 21412126
Alignment:
| Q |
13 |
gctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggac |
89 |
Q |
| |
|
|||||||| |||||||||||||| |||| ||| | |||||||||||||| |||||||| || ||| |||||||||| |
|
|
| T |
21412050 |
gctatggtgacgggagatgaccaaaaggccagattggcgactcatatgcttgctgaggaggctgagtactggtggac |
21412126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 3344 - 3220
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | |||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
3344 |
cggattttccgagctatggttacgggagatgaccagaaggttagactggcgactcatatgttgactgaggaagcagagcattggtggaccaatgccaagg |
3245 |
T |
|
| Q |
101 |
gcaggcttgagttgggagatgatgt |
125 |
Q |
| |
|
| |||||||||||||||| |||||| |
|
|
| T |
3244 |
gaaggcttgagttgggaggtgatgt |
3220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0225 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0225
Description:
Target: scaffold0225; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 27330 - 27206
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||| | |
|
|
| T |
27330 |
cggattttccgagctatggttacgggagatgaccagaaggtcagattagcgactcatatgctagctgaggaagcagagtactggtggaccaatgccaaag |
27231 |
T |
|
| Q |
101 |
gcaggcttgagttgggagatgatgt |
125 |
Q |
| |
|
| || |||||| |||||| |||||| |
|
|
| T |
27230 |
gaagacttgagatgggaggtgatgt |
27206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0467 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: scaffold0467
Description:
Target: scaffold0467; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 12701 - 12825
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| | || ||||| | |
|
|
| T |
12701 |
cggattttccgagctatggttacgggagatgaccagaaggtcagactggcgactcatatgctagctgaggaagcagagcactggtgggctaatgccaaag |
12800 |
T |
|
| Q |
101 |
gcaggcttgagttgggagatgatgt |
125 |
Q |
| |
|
| || |||||| |||||| |||||| |
|
|
| T |
12801 |
gaagacttgagatgggaggtgatgt |
12825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0467; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 1 - 115
Alignment:
| Q |
11 |
gagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagggcaggcttga |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| | || ||||| || || ||||| |
|
|
| T |
1 |
gagctatggttacgggagatgaccagaaggtcagactggcgactcatatgctagctgaggaagcagagcactggtgggctaatgccaaaggaagacttga |
100 |
T |
|
| Q |
111 |
gttgggagatgatgt |
125 |
Q |
| |
|
| |||||| |||||| |
|
|
| T |
101 |
gatgggaggtgatgt |
115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0218 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0218
Description:
Target: scaffold0218; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 321 - 445
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| | ||| || ||||||||||||||||| |||||||||||||||||||| |||||||| | |
|
|
| T |
321 |
cggattttccgagctatggttacgggagatgactagaaggtcaaacttgcaactcatatgctagctgaagaagcagagcactggtggacaaacgccaaag |
420 |
T |
|
| Q |
101 |
gcaggcttgagttgggagatgatgt |
125 |
Q |
| |
|
| |||||||||||||||| |||||| |
|
|
| T |
421 |
gaaggcttgagttgggaggtgatgt |
445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 23509494 - 23509370
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | |||||||||||||||||||||||||||| ||||| | |
|
|
| T |
23509494 |
cggattttccgagctatggttacgggagatgaccagaaggtcagactggcgactcatatgttgactgaggaagcagagcactggtggaccaatgccaaag |
23509395 |
T |
|
| Q |
101 |
gcaggcttgagttgggagatgatgt |
125 |
Q |
| |
|
| |||||| ||||||||| |||||| |
|
|
| T |
23509394 |
gaaggcttaagttgggaggtgatgt |
23509370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 22281641 - 22281517
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | |||||||||||||||||||||||||||| ||||| | |
|
|
| T |
22281641 |
cggattttccgagctatggttacgggagatgaccagaaggtcagactggcgactcatatgttgactgaggaagcagagcactggtggaccaatgccaaag |
22281542 |
T |
|
| Q |
101 |
gcaggcttgagttgggagatgatgt |
125 |
Q |
| |
|
| ||||||||| |||||| |||||| |
|
|
| T |
22281541 |
gaaggcttgagatgggaggtgatgt |
22281517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 20928974 - 20928850
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| | | |||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
20928974 |
cggattttccgagctatggttacgggagatgaccagaaggtcagactggcgactcataagttgactgaggaagcagagcattggtggaccaatgccaagg |
20928875 |
T |
|
| Q |
101 |
gcaggcttgagttgggagatgatgt |
125 |
Q |
| |
|
| ||||||||| ||||||||||||| |
|
|
| T |
20928874 |
gaaggcttgagatgggagatgatgt |
20928850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 20528973 - 20528849
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagg |
100 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||| || ||||| | |
|
|
| T |
20528973 |
cggattttccaagctatggttacggaagatgaccagaaggttagactagcgactcatatgttgactgaggaagcagagcactggtggactaatgccaaag |
20528874 |
T |
|
| Q |
101 |
gcaggcttgagttgggagatgatgt |
125 |
Q |
| |
|
| ||||||||| ||||||||||||| |
|
|
| T |
20528873 |
gaaggcttgagatgggagatgatgt |
20528849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 21847147 - 21847261
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagg |
100 |
Q |
| |
|
|||||||||| |||||||||||| || |||||||||||||| ||| | |||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
21847147 |
cggattttccaagctatggttactggtgatgaccagaaggtcagattggcgactcatatgctagctgaggaagcagagtactggtggaccaatgccaagg |
21847246 |
T |
|
| Q |
101 |
gcaggcttgagttgg |
115 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
21847247 |
gcagacttgagttgg |
21847261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 20649169 - 20649289
Alignment:
| Q |
5 |
ttttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagggcag |
104 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| |||||| || ||||| || || |
|
|
| T |
20649169 |
tttttcgagctatggtgacgggagatgaccagaaggtcagactggcgactcatatgcttgctgaggaagcagagcacttgtggactaatgccaaaggaag |
20649268 |
T |
|
| Q |
105 |
gcttgagttgggagatgatgt |
125 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
20649269 |
acttgagttgggaggtgatgt |
20649289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 21193374 - 21193472
Alignment:
| Q |
13 |
gctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagggcaggcttgag |
111 |
Q |
| |
|
|||||||| ||| | |||||||||||||| ||| | ||||||||||||| |||||||| || || | ||||||||||| |||||||| || |||||| |
|
|
| T |
21193374 |
gctatggtgacgagtgatgaccagaaggtcagattgacgactcatatgcttgctgaggaggccgaatattggtggaccaatgccaagggaagacttgag |
21193472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0462 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0462
Description:
Target: scaffold0462; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 3645 - 3521
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagg |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||| |||||| || ||||| | |
|
|
| T |
3645 |
cggattttccgagctatggtgacgggagatgaccagaaggtcagactagcgactcatatgcttgctgaggaagcagagaactagtggactaatgccaaag |
3546 |
T |
|
| Q |
101 |
gcaggcttgagttgggagatgatgt |
125 |
Q |
| |
|
| || |||||| |||||| |||||| |
|
|
| T |
3545 |
gaagacttgagatgggaggtgatgt |
3521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 15943203 - 15943325
Alignment:
| Q |
3 |
gattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagggc |
102 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||| | |||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
15943203 |
gattttccgagctatggttacaggagatgaccaaaaggttagactggcgactcatatgttgactgaggaagcggagcactggtggaccaatgccaaggga |
15943302 |
T |
|
| Q |
103 |
aggcttgagttgggagatgatgt |
125 |
Q |
| |
|
||||||||||||| || |||||| |
|
|
| T |
15943303 |
aggcttgagttggaaggtgatgt |
15943325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 6149459 - 6149583
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagg |
100 |
Q |
| |
|
|||||||||||||||||||| || |||| |||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| || ||||| | |
|
|
| T |
6149459 |
cggattttccgagctatggtgacaggaggtgaccagaaggtcaggctagcgactcatatgcttgctgaggaagcagagcactggtggactaatgccaaag |
6149558 |
T |
|
| Q |
101 |
gcaggcttgagttgggagatgatgt |
125 |
Q |
| |
|
| || |||||| |||||| |||||| |
|
|
| T |
6149559 |
gaagacttgagatgggaggtgatgt |
6149583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 25768748 - 25768632
Alignment:
| Q |
2 |
ggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaaggg |
101 |
Q |
| |
|
|||| ||||| |||||||| ||| | |||||||| ||||| ||| | |||||||||||||| |||||||| || || || |||||||| || ||||| || |
|
|
| T |
25768748 |
ggatattccgtgctatggtgacgagtgatgaccaaaaggtcagattggcgactcatatgcttgctgaggaggccgaacattggtggactaatgccaaagg |
25768649 |
T |
|
| Q |
102 |
caggcttgagttgggag |
118 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
25768648 |
aagacttgagttgggag |
25768632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0120 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0120
Description:
Target: scaffold0120; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 26111 - 25995
Alignment:
| Q |
2 |
ggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaaggg |
101 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||| || ||||| || |
|
|
| T |
26111 |
ggattttccgagctatggtgacaggagatgaccagaaggtcagactagcgactcatatgcttgttgaggaagcagagcactggtggactaatgccaaagg |
26012 |
T |
|
| Q |
102 |
caggcttgagttgggag |
118 |
Q |
| |
|
|| |||||| |||||| |
|
|
| T |
26011 |
aagacttgagatgggag |
25995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 130856 - 130980
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagg |
100 |
Q |
| |
|
||||||||| ||||||| ||||||| ||||||||| ||||| ||||| |||||||||||| | |||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
130856 |
cggattttctgagctattgttacggaagatgaccaaaaggttagactggcgactcatatgttgactgaggaagcagagcactagtggaccaatgccaagg |
130955 |
T |
|
| Q |
101 |
gcaggcttgagttgggagatgatgt |
125 |
Q |
| |
|
| |||||||| |||||||||||||| |
|
|
| T |
130956 |
gaaggcttgaattgggagatgatgt |
130980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 27710 - 27586
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagg |
100 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||||||||||||| |||||||||||| ||||||| |||||||||||| ||||||||||||| || ||||| | |
|
|
| T |
27710 |
cggattttccgagctacggtcacgagagatgaccagaaggtcagactagcgacttatatgcttgctgaggaagcaaagcactggtggactaatgccaaag |
27611 |
T |
|
| Q |
101 |
gcaggcttgagttgggagatgatgt |
125 |
Q |
| |
|
| || |||||| |||||| |||||| |
|
|
| T |
27610 |
gaagacttgagatgggaggtgatgt |
27586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0465 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold0465
Description:
Target: scaffold0465; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 12029 - 12120
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaa |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
12029 |
cggattttccgagctatggttacgggagatgaccagaaggtcagactggcgactcatatgttgactgaggaagcagagcactggtggaccaa |
12120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0615 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0615
Description:
Target: scaffold0615; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 8759 - 8883
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagg |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||| | ||||||| ||||||||||||||||| | |||||| | |
|
|
| T |
8759 |
cggattttccgagctatggttacggaagatgaccagaaggtcaggctagcgactcatatgttgactgaggaggcagagcactggtggactagcgccaaag |
8858 |
T |
|
| Q |
101 |
gcaggcttgagttgggagatgatgt |
125 |
Q |
| |
|
| || | ||||||||||| |||||| |
|
|
| T |
8859 |
gaagacatgagttgggaggtgatgt |
8883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0162 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0162
Description:
Target: scaffold0162; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 16723 - 16637
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtgg |
87 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| |||| | || |||||||||||| |
|
|
| T |
16723 |
cggattttccgagctatggttacgggagatgaccataaggtcagactagcaactcatatgctaggtgagaaggcggagcactggtgg |
16637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0610 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0610
Description:
Target: scaffold0610; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 3308 - 3405
Alignment:
| Q |
13 |
gctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaagggcaggcttga |
110 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| | |||||||||||||| |||||||||| |||||||||||||| || |||||||| || ||||| |
|
|
| T |
3308 |
gctatggtgacgggagatgaccagaaggttagattggcgactcatatgcttactgaggaagcggagcactggtggactaatgccaagggaagacttga |
3405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 97459 - 97362
Alignment:
| Q |
1 |
cggattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcactggtggaccaacgccaa |
98 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||||||||| ||| | |||||||||||||| ||||||||||| ||||| |||||||| || ||||| |
|
|
| T |
97459 |
cggatattccgtgctatggtgacgggagatgaccagaaggtcagattggcgactcatatgcttgctgaggaagctgagcagtggtggactaatgccaa |
97362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0673 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0673
Description:
Target: scaffold0673; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 4743 - 4822
Alignment:
| Q |
3 |
gattttccgagctatggttacgggagatgaccagaaggtgagactagcgactcatatgctagctgaggaagcagagcact |
82 |
Q |
| |
|
||||||| ||||| |||| || ||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||| |
|
|
| T |
4743 |
gattttctgagctgtggtcacaggagatgaccagaaggtcagactggcgactcaaatgcttgctgaggaagcagagcact |
4822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 16575172 - 16575220
Alignment:
| Q |
24 |
gggagatgaccagaaggtgagactagcgactcatatgctagctgaggaa |
72 |
Q |
| |
|
|||||||||||||||||| ||||| || ||||||||||| ||||||||| |
|
|
| T |
16575172 |
gggagatgaccagaaggtcagactggcaactcatatgcttgctgaggaa |
16575220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 16590490 - 16590442
Alignment:
| Q |
24 |
gggagatgaccagaaggtgagactagcgactcatatgctagctgaggaa |
72 |
Q |
| |
|
|||||||||||||||||| ||||| || ||||||||||| ||||||||| |
|
|
| T |
16590490 |
gggagatgaccagaaggtcagactggcaactcatatgcttgctgaggaa |
16590442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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