View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0780_low_9 (Length: 440)

Name: NF0780_low_9
Description: NF0780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0780_low_9
NF0780_low_9
[»] chr4 (2 HSPs)
chr4 (150-346)||(26280378-26280578)
chr4 (282-339)||(16038588-16038645)
[»] chr1 (2 HSPs)
chr1 (150-346)||(968273-968484)
chr1 (272-341)||(31697433-31697503)
[»] chr7 (5 HSPs)
chr7 (150-244)||(18297517-18297612)
chr7 (260-346)||(25443308-25443394)
chr7 (273-346)||(18297461-18297537)
chr7 (254-323)||(4156232-4156301)
chr7 (7-63)||(19316700-19316756)
[»] chr6 (3 HSPs)
chr6 (38-116)||(7814905-7814983)
chr6 (254-323)||(6229361-6229430)
chr6 (7-63)||(14435695-14435751)
[»] chr2 (1 HSPs)
chr2 (261-346)||(10708439-10708527)
[»] chr3 (3 HSPs)
chr3 (254-323)||(44316963-44317032)
chr3 (254-323)||(13866644-13866713)
chr3 (254-323)||(49528797-49528866)
[»] chr8 (1 HSPs)
chr8 (268-325)||(44633065-44633122)
[»] chr5 (1 HSPs)
chr5 (254-323)||(19185227-19185296)
[»] scaffold1089 (1 HSPs)
scaffold1089 (7-63)||(721-777)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 150 - 346
Target Start/End: Complemental strand, 26280578 - 26280378
Alignment:
Q  150 gcaatcaacatgagaactttggaaagcttcacagttgaaagcttt-tgctttttgagatgaagaacacggatgagtttagatccgaaaatgggttgnnnn 248  Q
    |||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||||||||||||||||         
T  26280578 gcaatcaacatgagaactttggaaaggttcacagttgaaagatttatgctttttgagatggagaacacagatgagtttagatccgaaaatgggttttttt 26280479  T
Q  249 nnnnn---aaggattgatgatgatggatttaaatccgaaaatgggttgtagtgaaggattggtgatgataatgatgatgataaagggtttagatgatgat 345  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26280478 ttttttttaaggattgatgatgatggatttaaatccgaaaatgggttgtagtgaaggattggtgatgataatgatgatgataaagggtttagatgatgat 26280379  T
Q  346 g 346  Q
    |    
T  26280378 g 26280378  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 339
Target Start/End: Complemental strand, 16038645 - 16038588
Alignment:
Q  282 gaaaatgggttgtagtgaaggattggtgatgataatgatgatgataaagggtttagat 339  Q
    ||||| ||||| | ||||||||||| ||||||| ||||||||||| ||||||||||||    
T  16038645 gaaaacgggtttttgtgaaggattgatgatgatgatgatgatgatgaagggtttagat 16038588  T

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Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 150 - 346
Target Start/End: Complemental strand, 968484 - 968273
Alignment:
Q  150 gcaatcaacatgagaactttggaaagcttcacagttgaaagcttt-tgctttttgagatgaagaacacgga-----------tgagtttagatccgaaaa 237  Q
    ||||||||| |||||||||||||||| | |||||||||||| ||| |||||||||||||| ||||||| ||           ||||||||||||||||||    
T  968484 gcaatcaacttgagaactttggaaaggtccacagttgaaagatttatgctttttgagatggagaacacagattcaacacagttgagtttagatccgaaaa 968385  T
Q  238 tggg---ttgnnnnnnnnnaaggattgatgatgatggatttaaatccgaaaatgggttgtagtgaaggattggtgatgataatgatgatgataaagggtt 334  Q
    || |   ||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  968384 tgagttattttttttttttaaggattgatgatgatggatttaaatccgaaaatgggttgtagtgaaggattggtgatgataatgatgatgataaagggtt 968285  T
Q  335 tagatgatgatg 346  Q
    ||||||||||||    
T  968284 tagatgatgatg 968273  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 341
Target Start/End: Complemental strand, 31697503 - 31697433
Alignment:
Q  272 atttaaatccgaaaatgggttgtagtgaaggattggtgatgataatgatgatga-taaagggtttagatga 341  Q
    ||||| |||| ||||||| || ||||||||||||||||||| | |||||||| | |||| |||||||||||    
T  31697503 atttagatccaaaaatggattttagtgaaggattggtgatggtgatgatgataattaaatggtttagatga 31697433  T

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Target: chr7 (Bit Score: 84; Significance: 9e-40; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 150 - 244
Target Start/End: Complemental strand, 18297612 - 18297517
Alignment:
Q  150 gcaatcaacatgagaactttggaaagcttcacagttgaaagcttt-tgctttttgagatgaagaacacggatgagtttagatccgaaaatgggttg 244  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18297612 gcaatcaacatgagaactttggaaaggttcacagttgaaagctttatgctttttgagatgaagaacacggatgagtttagatccgaaaatgggttg 18297517  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 260 - 346
Target Start/End: Complemental strand, 25443394 - 25443308
Alignment:
Q  260 tgatgatgatggatttaaatccgaaaatgggttgtagtgaaggattggtgatgataatgatgatgataaagggtttagatgatgatg 346  Q
    |||||||||||| |||| ||||||||||||||| | || |||||||||||||||| |||||||||||||||||||||||||||||||    
T  25443394 tgatgatgatgggtttagatccgaaaatgggttttggtaaaggattggtgatgatgatgatgatgataaagggtttagatgatgatg 25443308  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 273 - 346
Target Start/End: Complemental strand, 18297537 - 18297461
Alignment:
Q  273 tttaaatccgaaaatgggttgtagtgaaggattggtgatgataatgatga---tgataaagggtttagatgatgatg 346  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||    
T  18297537 tttagatccgaaaatgggttgtagtgaaggattggtgatgataatgatgatgatgataaaggatttagatgatgatg 18297461  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 323
Target Start/End: Original strand, 4156232 - 4156301
Alignment:
Q  254 aaggattgatgatgatggatttaaatccgaaaatgggttgtagtgaaggattggtgatgataatgatgat 323  Q
    ||||| |||||||||||| |||| ||| ||||||||||| | |||||||||||||| || | ||||||||    
T  4156232 aaggaatgatgatgatgggtttagatctgaaaatgggtttttgtgaaggattggtggtggtgatgatgat 4156301  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 19316700 - 19316756
Alignment:
Q  7 gtgagatgaaacacattcaataaccgaggatgggcatttccatttcttggatgagct 63  Q
    |||||||||||||||||||| ||| ||   |||||||||||||| ||| ||||||||    
T  19316700 gtgagatgaaacacattcaagaactgaaattgggcatttccattccttagatgagct 19316756  T

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Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 7814983 - 7814905
Alignment:
Q  38 gggcatttccatttcttggatgagcttgtatacttcgactgtcaaggagataaaaaacaacatttatacaaaatttatg 116  Q
    ||||||||||||| ||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  7814983 gggcatttccattccttggataaggttgtattcttcgactgtcaaggagataaaaaacaacatttatacaaaatatatg 7814905  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 323
Target Start/End: Original strand, 6229361 - 6229430
Alignment:
Q  254 aaggattgatgatgatggatttaaatccgaaaatgggttgtagtgaaggattggtgatgataatgatgat 323  Q
    ||||| |||||||||||| |||| ||| ||||||||||| | |||||||||||||| || | ||||||||    
T  6229361 aaggaatgatgatgatgggtttagatctgaaaatgggtttttgtgaaggattggtggtggtgatgatgat 6229430  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 14435695 - 14435751
Alignment:
Q  7 gtgagatgaaacacattcaataaccgaggatgggcatttccatttcttggatgagct 63  Q
    |||||| ||||||||||||||||||||   ||| |||||||||| ||||||||||||    
T  14435695 gtgagacgaaacacattcaataaccgaatttggccatttccattccttggatgagct 14435751  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 261 - 346
Target Start/End: Complemental strand, 10708527 - 10708439
Alignment:
Q  261 gatgatgatggatttaaatccgaaaatgggttgtagtgaaggattggtgatgataatgatga---tgataaagggtttagatgatgatg 346  Q
    ||||||||||| |||| |||| |||||||||  |||| |||||||||||||||| |||||||   ||||||||||||||||||||||||    
T  10708527 gatgatgatgggtttagatccaaaaatgggtcttagtaaaggattggtgatgattatgatgatgatgataaagggtttagatgatgatg 10708439  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 323
Target Start/End: Complemental strand, 44317032 - 44316963
Alignment:
Q  254 aaggattgatgatgatggatttaaatccgaaaatgggttgtagtgaaggattggtgatgataatgatgat 323  Q
    ||||| |||||||||||| |||| ||| ||||||||||| | |||||||||||||| || | ||||||||    
T  44317032 aaggaatgatgatgatgggtttagatctgaaaatgggtttttgtgaaggattggtggtggtgatgatgat 44316963  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 323
Target Start/End: Original strand, 13866644 - 13866713
Alignment:
Q  254 aaggattgatgatgatggatttaaatccgaaaatgggttgtagtgaaggattggtgatgataatgatgat 323  Q
    ||||| |||||||||||| |||| ||| |||||||| || | |||||||||||||| || | ||||||||    
T  13866644 aaggaatgatgatgatgggtttagatctgaaaatggttttttgtgaaggattggtggtggtgatgatgat 13866713  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 323
Target Start/End: Original strand, 49528797 - 49528866
Alignment:
Q  254 aaggattgatgatgatggatttaaatccgaaaatgggttgtagtgaaggattggtgatgataatgatgat 323  Q
    ||||| |||||||||||| |||| ||  ||||||||||| | |||||||||||||| || | ||||||||    
T  49528797 aaggaatgatgatgatgggtttagatttgaaaatgggtttttgtgaaggattggtggtggtgatgatgat 49528866  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 44633122 - 44633065
Alignment:
Q  268 atggatttaaatccgaaaatgggttgtagtgaaggattggtgatgataatgatgatga 325  Q
    |||| |||| ||| ||||||||||| | ||||||||||| ||||||| ||||||||||    
T  44633122 atgggtttagatcagaaaatgggtttttgtgaaggattgatgatgatgatgatgatga 44633065  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 323
Target Start/End: Original strand, 19185227 - 19185296
Alignment:
Q  254 aaggattgatgatgatggatttaaatccgaaaatgggttgtagtgaaggattggtgatgataatgatgat 323  Q
    ||||| |||||||||||  |||| ||| ||||||||||| | |||||||||||||| || | ||||||||    
T  19185227 aaggaatgatgatgatgagtttagatctgaaaatgggtttttgtgaaggattggtggtggtgatgatgat 19185296  T

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Target: scaffold1089 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 721 - 777
Alignment:
Q  7 gtgagatgaaacacattcaataaccgaggatgggcatttccatttcttggatgagct 63  Q
    |||||| ||||||||||||| ||||||   ||| |||||||||| ||||||||||||    
T  721 gtgagacgaaacacattcaagaaccgaatttggccatttccattccttggatgagct 777  T

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