View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0781_high_11 (Length: 262)

Name: NF0781_high_11
Description: NF0781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0781_high_11
NF0781_high_11
[»] chr1 (1 HSPs)
chr1 (30-262)||(36314600-36314832)
[»] chr8 (19 HSPs)
chr8 (69-262)||(19390519-19390712)
chr8 (55-262)||(19345105-19345312)
chr8 (45-262)||(19410716-19410933)
chr8 (45-262)||(19457735-19457952)
chr8 (45-262)||(19523126-19523343)
chr8 (52-262)||(19504028-19504238)
chr8 (69-262)||(19337389-19337582)
chr8 (100-262)||(19468610-19468772)
chr8 (100-262)||(19555531-19555693)
chr8 (78-258)||(19469524-19469704)
chr8 (78-258)||(19540448-19540628)
chr8 (78-258)||(19592070-19592250)
chr8 (69-262)||(19355409-19355602)
chr8 (82-262)||(19376553-19376733)
chr8 (87-250)||(19172821-19172984)
chr8 (100-262)||(19404684-19404846)
chr8 (87-262)||(19287650-19287825)
chr8 (112-245)||(19370913-19371046)
chr8 (112-245)||(19341133-19341266)
[»] chr6 (1 HSPs)
chr6 (87-262)||(19543002-19543177)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 30 - 262
Target Start/End: Original strand, 36314600 - 36314832
Alignment:
Q  30 ttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaa 129  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314600 ttcaacaccacttgttaacttgcccttcgaggatagctcccatcatataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaa 36314699  T
Q  130 acaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttccaatacactttgccgcgtt 229  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36314700 acaataatgtactgatacatatgttgaacattcactggaatgttctcgaacattccattgcttttaagttttccacttttccaatacactttcccgcgtt 36314799  T
Q  230 ttttgatgttcaattcaccttgttttggttccc 262  Q
    |||||||||||||||||||||||||||||||||    
T  36314800 ttttgatgttcaattcaccttgttttggttccc 36314832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 8e-70; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 69 - 262
Target Start/End: Complemental strand, 19390712 - 19390519
Alignment:
Q  69 ccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattgga 168  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||| ||||||||||| ||||| ||| ||||||||||||  |||    
T  19390712 ccatcgtataaacttcccatctttaacttcgaaagcaaaagaatcttcatccttgttagagacaataatgtattgatatatacgttgaacattcaccgga 19390613  T
Q  169 atgttctcgaacattccattgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttgttttggttccc 262  Q
    ||||||||||| |  |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  19390612 atgttctcgaataaaccattgcttttaagttttccgcttttccaatacactttgccgcgtttcttgatgttcaattccccttgttttggttccc 19390519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 55 - 262
Target Start/End: Complemental strand, 19345312 - 19345105
Alignment:
Q  55 ttcgaggatagctcccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgtt 154  Q
    ||||||| ||| | |||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||    
T  19345312 ttcgaggttagttgccatcgtgcaaacttcccatctttaacttcgaaagcgaaagaatcttcattcttgttagagacaataatgtactgatatatacgtt 19345213  T
Q  155 gaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttgttt 254  Q
    |||| ||| | |||||||||||||| ||||||||||| ||||||||||| |||||||||||| || |||||| ||| ||||||||||||||||||| |||    
T  19345212 gaactttcgtgggaatgttctcgaatattccattgctattaagttttccgcttttccaatacgctatgccgcttttcttgatgttcaattcaccttcttt 19345113  T
Q  255 tggttccc 262  Q
    ||||||||    
T  19345112 tggttccc 19345105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 45 - 262
Target Start/End: Complemental strand, 19410933 - 19410716
Alignment:
Q  45 taacttgcccttcgaggatagctcccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactga 144  Q
    |||||| |||||||||||||| |||||| ||  ||||||||||||||||||||| || | |||||||||||||| ||||||||| |||||||||||||||    
T  19410933 taacttccccttcgaggatagttcccattgtgcaaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactga 19410834  T
Q  145 tacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaatt 244  Q
    ||| ||  |||||||||    ||||| |||||||| | ||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||    
T  19410833 tacctactttgaacattggccggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttttcttgatgttcaatt 19410734  T
Q  245 caccttgttttggttccc 262  Q
    ||||||||||||||||||    
T  19410733 caccttgttttggttccc 19410716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 45 - 262
Target Start/End: Complemental strand, 19457952 - 19457735
Alignment:
Q  45 taacttgcccttcgaggatagctcccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactga 144  Q
    |||||| |||||||||||||| |||||| ||  ||||||||||||||||||||| || | |||||||||||||| ||||||||| |||||||||||||||    
T  19457952 taacttccccttcgaggatagttcccattgtgcaaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactga 19457853  T
Q  145 tacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaatt 244  Q
    ||| ||  |||||||||    ||||| |||||||| | ||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||    
T  19457852 tacctactttgaacattggccggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttttcttgatgttcaatt 19457753  T
Q  245 caccttgttttggttccc 262  Q
    ||||||||||||||||||    
T  19457752 caccttgttttggttccc 19457735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 45 - 262
Target Start/End: Original strand, 19523126 - 19523343
Alignment:
Q  45 taacttgcccttcgaggatagctcccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactga 144  Q
    |||||| |||||||||||||| |||||| ||  ||||||||||||||||||||| || | |||||||||||||| ||||||||| |||||||||||||||    
T  19523126 taacttccccttcgaggatagttcccattgtgcaaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactga 19523225  T
Q  145 tacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaatt 244  Q
    ||| ||  |||||||||    ||||| |||||||| | ||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||    
T  19523226 tacctactttgaacattggccggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttttcttgatgttcaatt 19523325  T
Q  245 caccttgttttggttccc 262  Q
    ||||||||||||||||||    
T  19523326 caccttgttttggttccc 19523343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 52 - 262
Target Start/End: Original strand, 19504028 - 19504238
Alignment:
Q  52 cccttcgaggatagctcccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatat 151  Q
    |||||||||| ||| | |||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||     
T  19504028 cccttcgaggttagttgccatcgtgcaaacttcccatctttaacttcgaaagcgaaagaatcttcattcttgttagagacaataatgtactgatatatac 19504127  T
Q  152 gttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttg 251  Q
    ||||||| ||  | |||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| |||  | ||||||||||||| ||     
T  19504128 gttgaacttttgtgggaatgttctcgaatattccattgcttttaagttttccgcttttccaatgcactttgccgcttttccttatgttcaattcacgttc 19504227  T
Q  252 ttttggttccc 262  Q
    |||||||||||    
T  19504228 ttttggttccc 19504238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 69 - 262
Target Start/End: Complemental strand, 19337582 - 19337389
Alignment:
Q  69 ccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattgga 168  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| || ||| ||||||| |||   |||    
T  19337582 ccatcgtataaatttcccatctttaacttcaaaagcaaaagaatcttcatccttgttagacacaataatgtactggtatatacgttgaactttcgcagga 19337483  T
Q  169 atgttctcgaacattccattgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttgttttggttccc 262  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| | |||  |||||||||||||||||| |||||||||||    
T  19337482 atgttctcgaacattccattgcttttgagttttccacttttccaatgcactttgccacttttcctgatgttcaattcaccttcttttggttccc 19337389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 19468610 - 19468772
Alignment:
Q  100 aaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagtt 199  Q
    |||| |||||||||||| |  |||||||| ||||||||||||||||||||||||||||||||||  ||||| |||||||| | |||||||||||||||||    
T  19468610 aaagtgaaagaatcttcgtctttgttagagacaataatgtactgatacatatgttgaacattcaccggaatattctcgaataatccattgcttttaagtt 19468709  T
Q  200 ttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttgttttggttccc 262  Q
    |||| |||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||    
T  19468710 ttccgcttttccaatacactttgccgcttttcttgatgatcaattcaccttgttttggttccc 19468772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 19555531 - 19555693
Alignment:
Q  100 aaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagtt 199  Q
    |||| |||||||||||| |  |||||||| ||||||||||||||||||||||||||||||||||  ||||| |||||||| | |||||||||||||||||    
T  19555531 aaagtgaaagaatcttcgtctttgttagagacaataatgtactgatacatatgttgaacattcaccggaatattctcgaataatccattgcttttaagtt 19555630  T
Q  200 ttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttgttttggttccc 262  Q
    |||| |||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||    
T  19555631 ttccgcttttccaatacactttgccgcttttcttgatgatcaattcaccttgttttggttccc 19555693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 78 - 258
Target Start/End: Original strand, 19469524 - 19469704
Alignment:
Q  78 aaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcg 177  Q
    ||||||||||||||||||||| || | |||||||||||||| ||||||||| |||||||||||||||||| ||| |||||||||    ||||| ||||||    
T  19469524 aaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggccggaatattctcg 19469623  T
Q  178 aacattccattgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttgttttggt 258  Q
    || | ||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||| |||| |||||||    
T  19469624 aataatccattgcttttaagttttccgcttttccaatacactttgccgcttttcttgatgttcaattctccttcttttggt 19469704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 78 - 258
Target Start/End: Original strand, 19540448 - 19540628
Alignment:
Q  78 aaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcg 177  Q
    ||||||||||||||||||||| || | |||||||||||||| ||||||||| |||||||||||||||||| ||| |||||||||    ||||| ||||||    
T  19540448 aaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggccggaatattctcg 19540547  T
Q  178 aacattccattgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttgttttggt 258  Q
    || | ||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||| |||| |||||||    
T  19540548 aataatccattgcttttaagttttccgcttttccaatacactttgccgcttttcttgatgttcaattctccttcttttggt 19540628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 78 - 258
Target Start/End: Complemental strand, 19592250 - 19592070
Alignment:
Q  78 aaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcg 177  Q
    ||||||||||||||||||||| || | |||||||||||||| ||||||||| |||||||||||||||||| ||| |||||||||    ||||| ||||||    
T  19592250 aaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggccggaatattctcg 19592151  T
Q  178 aacattccattgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttgttttggt 258  Q
    || | ||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||| |||| |||||||    
T  19592150 aataatccattgcttttaagttttccgcttttccaatacactttgccgcttttcttgatgttcaattctccttcttttggt 19592070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 69 - 262
Target Start/End: Complemental strand, 19355602 - 19355409
Alignment:
Q  69 ccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattgga 168  Q
    |||||||||||| |||||||| |||||||| ||||| ||||||||||||| ||||||||| |||||||||||| |||| |||  |||||| |||  ||||    
T  19355602 ccatcgtataaaattcccatcattaacttcgaaagcaaaagaatcttcatccttgttagacacaataatgtaccgatatatactttgaactttcgctgga 19355503  T
Q  169 atgttctcgaacattccattgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttgttttggttccc 262  Q
    ||||||||||| |||||||| ||| |||||||||| |||||||||| ||||||||||| |||  | |||||||||||||||| |||||||||||    
T  19355502 atgttctcgaatattccattacttctaagttttccgcttttccaatgcactttgccgcttttccttatgttcaattcaccttcttttggttccc 19355409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 82 - 262
Target Start/End: Complemental strand, 19376733 - 19376553
Alignment:
Q  82 ttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaaca 181  Q
    |||| |||||||| |||||||   || |||||||||| ||||||||| ||||| |||||| ||||||||| |||||||||    ||||| |||||||| |    
T  19376733 ttccgatctttaatttcaaaactaaaggaatcttcatccttgttagagacaatgatgtaccgatacatattttgaacattggccggaatattctcgaata 19376634  T
Q  182 ttccattgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttgttttggttccc 262  Q
     ||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||    
T  19376633 atccattgcttttaagttttccgcttttccaatacactttgccgcttttcttgatgttcagttcaccttgttttggttccc 19376553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 87 - 250
Target Start/End: Original strand, 19172821 - 19172984
Alignment:
Q  87 atctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattcca 186  Q
    |||||| | ||| |||| ||| || ||||||| ||||||||| ||||||||||| ||||||| ||||||||| |||| | ||||||||| ||| | ||||    
T  19172821 atctttgatttcgaaagtgaaggagtcttcatccttgttagagacaataatgtattgatacacatgttgaactttcactagaatgttcttgaataatcca 19172920  T
Q  187 ttgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaattcacctt 250  Q
    ||||| ||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||    
T  19172921 ttgctgttaagttttccgcttttccaatacactttgccgcgttgcttgatgttcaattcacctt 19172984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 100 - 262
Target Start/End: Complemental strand, 19404846 - 19404684
Alignment:
Q  100 aaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagtt 199  Q
    |||| |||||||||||||| ||||||||| |||||| |||| |||||||||  |||||||||    ||||| |||||||| | ||||| |||||||||||    
T  19404846 aaagtgaaagaatcttcatccttgttagagacaatagtgtattgatacatagtttgaacattggccggaatattctcgaataatccatcgcttttaagtt 19404747  T
Q  200 ttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttgttttggttccc 262  Q
    |||| |||||||||||||||||||| | ||| |||||||||| ||||||||||||||||||||    
T  19404746 ttccgcttttccaatacactttgcctcttttcttgatgttcagttcaccttgttttggttccc 19404684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 87 - 262
Target Start/End: Complemental strand, 19287825 - 19287650
Alignment:
Q  87 atctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattcca 186  Q
    |||||| | ||| |||| ||| || ||||||| ||||||||| ||||||||||| ||||||| | ||||||| |||| ||||||||||||||| |  |||    
T  19287825 atctttgatttcgaaagtgaaggagtcttcatccttgttagagacaataatgtattgatacacacgttgaactttcactggaatgttctcgaataaacca 19287726  T
Q  187 ttgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttgttttggttccc 262  Q
    |||| | || ||||||| |||||||||||||||||||||||||  ||||||||||||||||||| ||| |||||||    
T  19287725 ttgcgtctacgttttccgcttttccaatacactttgccgcgttgcttgatgttcaattcaccttctttaggttccc 19287650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 112 - 245
Target Start/End: Complemental strand, 19371046 - 19370913
Alignment:
Q  112 tcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttcc 211  Q
    |||||||  |||||||| ||||| |||||  |||||| |||||| ||||||  ||||||||||||||| | |||||||||| ||||||||||||||||||    
T  19371046 tcttcatctttgttagagacaatcatgtatcgatacacatgttggacattctctggaatgttctcgaataatccattgcttctaagttttccacttttcc 19370947  T
Q  212 aatacactttgccgcgttttttgatgttcaattc 245  Q
    ||| |||||||||  |||| || |||||||||||    
T  19370946 aatgcactttgccttgtttcttaatgttcaattc 19370913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 112 - 245
Target Start/End: Complemental strand, 19341266 - 19341133
Alignment:
Q  112 tcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttcc 211  Q
    |||||||  |||||||| ||||| |||||  |||||| |||||| ||||||  | ||||||||||||| | ||||||||||  |||||||||||||||||    
T  19341266 tcttcatctttgttagagacaatcatgtatcgatacacatgttggacattctctagaatgttctcgaataatccattgcttccaagttttccacttttcc 19341167  T
Q  212 aatacactttgccgcgttttttgatgttcaattc 245  Q
    ||| |||||||||  |||| || |||||||||||    
T  19341166 aatgcactttgccttgtttcttaatgttcaattc 19341133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 87 - 262
Target Start/End: Complemental strand, 19543177 - 19543002
Alignment:
Q  87 atctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattcca 186  Q
    |||||||| || |||||  || ||||||||||  || ||||||||||||||||| | ||||| | |||||||||||   || |||||| |||| |  |||    
T  19543177 atctttaattttaaaagtaaaggaatcttcatctttcttagaaacaataatgtattcatacacacgttgaacattcgccggtatgttcacgaataaccca 19543078  T
Q  187 ttgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttgttttggttccc 262  Q
    || ||| |||||||||| |||||||||||||||||||||| ||| ||||| | |||||||| ||| ||||||||||    
T  19543077 tttcttctaagttttccgcttttccaatacactttgccgcttttcttgatttccaattcacgttgctttggttccc 19543002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 144 times since January 2019
Visitors: 5777