View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0781_high_2 (Length: 486)
Name: NF0781_high_2
Description: NF0781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0781_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 119 - 399
Target Start/End: Complemental strand, 15347580 - 15347299
Alignment:
| Q |
119 |
ctcgaattgcatcctcacggaagcatgagcatttaaaaagtggagagtgtattggattttcatttcttcaaatttttattatcaatt--gagtatcatat |
216 |
Q |
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| T |
15347580 |
ctcgaattgcgtcctcgcggaagcatgagcatttaaaaagtggagagtgtatttgattttcatttcttcaaatttttattatcaattttgagtatcatat |
15347481 |
T |
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| Q |
217 |
gtttgaaggtgtagatagaattagggggtttgatggtggggtagttaaaatggggtgaagttaggtgttggattaaagatgtcttcttaaatgattttat |
316 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15347480 |
gtttgaaggtgtaggtagaattagggggtttgatgctggggtagttaaaatggggtgaagttaggtgttggattaaagatgtcttcttaaatgattttat |
15347381 |
T |
|
| Q |
317 |
gtatatttactttttgaatgattatgatgatgagaataagtgttgttgttgatggtggtgtagagattaaatgatgatgatgt |
399 |
Q |
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| T |
15347380 |
gtatatttactttttgaatgattttgatgatgagaataagtgttgttgttgatggtggtgtagagatt-aatgatgatgatgt |
15347299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 281 - 399
Target Start/End: Original strand, 15347957 - 15348075
Alignment:
| Q |
281 |
gtgttggattaaagatgtcttcttaaatgattttatgtatatttactttttgaatgattatgatgatgagaataagtgttgttgttgatggtggtgtaga |
380 |
Q |
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||||||||||||||||| ||||| ||||||||||||||| || | ||||||||||||| ||||||||| | || ||||||||||| ||| |||||||| |
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| T |
15347957 |
gtgttggattaaagatggtttcttgaatgattttatgtatgttgagtttttgaatgattttgatgatgaaattatgtgttgttgttaatgatggtgtagt |
15348056 |
T |
|
| Q |
381 |
gattaaatgatgatgatgt |
399 |
Q |
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||||| |||||| |||||| |
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| T |
15348057 |
gattagatgatggtgatgt |
15348075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 15347700 - 15347635
Alignment:
| Q |
1 |
gaaaatattttctcattttttatcttcggggta--ttcaattcaaaataaaaatgaacattcatgt |
64 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||| |
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| T |
15347700 |
gaaaatattttctcattttttatcttgggggtattttcaattcgaaataaaaatgaacattcatgt |
15347635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 184 - 398
Target Start/End: Complemental strand, 934072 - 933860
Alignment:
| Q |
184 |
cttcaaatttttattatcaatt--gagtatcatatgtttgaaggtgtagatagaattagggggtttgatggtggggtagttaaaatggggtgaagttagg |
281 |
Q |
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|||||| ||||||||||||||| ||||||||||| ||||||| |||||| |||||||| ||||||| ||||||||| ||||||||||||||||||| |
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| T |
934072 |
cttcaattttttattatcaattttgagtatcatatttttgaagctgtaga----attaggggttttgatgatggggtagtaaaaatggggtgaagttagg |
933977 |
T |
|
| Q |
282 |
tgttggattaaagatgtcttcttaaatgattttatgtatatttactttttgaatgattatgatgatgagaataagtgttgttgttgatggtggtgtagag |
381 |
Q |
| |
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|||| ||||||||| | ||| ||||||||||||||||| || | |||| ||||||| ||||||||||| || ||||||||| || |||||||||| | |
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| T |
933976 |
tgtttgattaaagagggtttcctaaatgattttatgtatgttgaattttataatgattttgatgatgagattaggtgttgttgatggcggtggtgtagtg |
933877 |
T |
|
| Q |
382 |
attaaatgatgatgatg |
398 |
Q |
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||| || ||||||||| |
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| T |
933876 |
attcgataatgatgatg |
933860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 278 - 376
Target Start/End: Original strand, 934407 - 934502
Alignment:
| Q |
278 |
taggtgttggattaaagatgtcttcttaaatgattttatgtatatttactttttgaatgattatgatgatgagaataagtgttgttgttgatggtggtg |
376 |
Q |
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|||||||||||||||||||| |||||| |||||||| || ||| || | ||||||||||||| |||||||||| | ||||||||||||||||||||| |
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| T |
934407 |
taggtgttggattaaagatggcttctttaatgatttaatttatgttgaatttttgaatgattttgatgatgag---atgtgttgttgttgatggtggtg |
934502 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 181 - 385
Target Start/End: Complemental strand, 7002113 - 7001909
Alignment:
| Q |
181 |
tttcttcaaatttttattatcaatt--gagtatcatatgtttgaaggtgtagatagaattagggggtttgatggtggggtagttaaaatggggtgaagtt |
278 |
Q |
| |
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|||| |||| |||||||||| |||| ||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||| |||||| ||||||||| |
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| T |
7002113 |
tttcatcaattttttattatgaattttgagtatcatatttttgaaggt----atagaattaagggttttgatggtggggtagtaaaaatgaggtgaagtt |
7002018 |
T |
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| Q |
279 |
aggtgttggattaaaga-tgtcttcttaaatgattttatgtatatttactttttgaatgattatgatgatgagaataagtgttgttgttgatgg---tgg |
374 |
Q |
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|||||||||||||| || ||| ||||| || |||||||||||| ||| ||||| ||||||| ||||||||||| |||||||||||||| |||| ||| |
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| T |
7002017 |
aggtgttggattaaggagtgt-ttcttgaaagattttatgtat-gttatttttttaatgattttgatgatgagattaagtgttgttgttaatggtgttgg |
7001920 |
T |
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| Q |
375 |
tgtagagatta |
385 |
Q |
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||||||||||| |
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| T |
7001919 |
tgtagagatta |
7001909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 349
Target Start/End: Complemental strand, 3893486 - 3893415
Alignment:
| Q |
278 |
taggtgttggattaaagatgtcttcttaaatgattttatgtatatttactttttgaatgattatgatgatga |
349 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||| || | | ||||||||||| ||||||||| |
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| T |
3893486 |
taggtgttggattaaagatgatttcttgaatgattttatgtatgttgagtatttgaatgattttgatgatga |
3893415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 3893742 - 3893805
Alignment:
| Q |
1 |
gaaaatattttctcattttttatcttcggggtattcaattcaaaataaaaatgaacattcatgt |
64 |
Q |
| |
|
|||||||||||||| ||||| ||| ||| | |||||||||||||| |||||||||||||||| |
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|
| T |
3893742 |
gaaaatattttctcctttttggccttggggttgttcaattcaaaatacaaatgaacattcatgt |
3893805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 232 - 376
Target Start/End: Original strand, 45438318 - 45438461
Alignment:
| Q |
232 |
tagaattagggggtttgatggtggggtagttaaaatggggtgaagttaggtgttggattaaagatgtcttcttaaatgattttatgtatatttacttttt |
331 |
Q |
| |
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|||||||||||| ||||||||||||||| | ||||||||||||||||||| ||| ||||||||| | ||||| ||||||||||||||| || | ||||| |
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| T |
45438318 |
tagaattaggggttttgatggtggggtaataaaaatggggtgaagttaggagtttgattaaagagggtttcttgaatgattttatgtatgttgaattttt |
45438417 |
T |
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| Q |
332 |
gaatgattatgatgatgagaataagtgttgttgttgatggtggtg |
376 |
Q |
| |
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| T |
45438418 |
taatgattttgatg-taagaataggtgttgttgttgatggtggtg |
45438461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 272 - 377
Target Start/End: Complemental strand, 9562350 - 9562245
Alignment:
| Q |
272 |
tgaagttaggtgttggattaaagatgtcttcttaaatgattttatgtatatttactttttgaatgattatgatgatgagaataagtgttgttgttgatgg |
371 |
Q |
| |
|
|||||||||||||||||||||| | ||||| || ||| ||||||||||| |||||||||| ||||||| ||||||||||| || || ||||||||||||| |
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| T |
9562350 |
tgaagttaggtgttggattaaaaaggtctttttgaattattttatgtatgtttactttttaaatgattttgatgatgagattaggtattgttgttgatgg |
9562251 |
T |
|
| Q |
372 |
tggtgt |
377 |
Q |
| |
|
|||||| |
|
|
| T |
9562250 |
tggtgt |
9562245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 364
Target Start/End: Complemental strand, 21016781 - 21016688
Alignment:
| Q |
271 |
gtgaagttaggtgttggattaaagatgtcttcttaaatgattttatgtatatttactttttgaatgattatgatgatgagaataagtgttgttg |
364 |
Q |
| |
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|||||||||| |||||||||||||| ||||||| ||||||||||||||| |||| ||||||||| || | ||||||||| || |||||||| |
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| T |
21016781 |
gtgaagttagatgttggattaaagagatcttcttgaatgattttatgtatgtttaacttttgaatgttttttatgatgagattagatgttgttg |
21016688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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