View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0781_low_13 (Length: 339)

Name: NF0781_low_13
Description: NF0781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0781_low_13
NF0781_low_13
[»] scaffold0433 (1 HSPs)
scaffold0433 (89-213)||(8167-8291)
[»] chr3 (23 HSPs)
chr3 (89-213)||(6111159-6111283)
chr3 (89-213)||(13212359-13212483)
chr3 (89-206)||(15599915-15600032)
chr3 (89-206)||(10571597-10571714)
chr3 (89-206)||(10578363-10578480)
chr3 (89-206)||(15606460-15606577)
chr3 (89-206)||(16481489-16481606)
chr3 (89-213)||(8491443-8491567)
chr3 (89-213)||(15341243-15341367)
chr3 (89-213)||(15356610-15356734)
chr3 (78-206)||(18538043-18538171)
chr3 (89-213)||(13517868-13517992)
chr3 (75-206)||(32056076-32056207)
chr3 (89-213)||(17196772-17196896)
chr3 (89-213)||(1646520-1646644)
chr3 (105-213)||(23014367-23014475)
chr3 (120-206)||(16201309-16201395)
chr3 (146-213)||(13258661-13258728)
chr3 (90-156)||(17137439-17137505)
chr3 (154-213)||(17780187-17780246)
chr3 (154-213)||(19081488-19081547)
chr3 (88-206)||(25801252-25801369)
chr3 (141-205)||(54333200-54333264)
[»] chr6 (12 HSPs)
chr6 (89-213)||(17690464-17690588)
chr6 (89-213)||(27278426-27278550)
chr6 (89-213)||(27297718-27297842)
chr6 (89-213)||(27303317-27303441)
chr6 (89-213)||(27380251-27380375)
chr6 (89-213)||(27470634-27470758)
chr6 (89-213)||(17683481-17683605)
chr6 (89-213)||(29309949-29310073)
chr6 (89-213)||(29316908-29317032)
chr6 (89-213)||(11652757-11652881)
chr6 (89-206)||(18336648-18336765)
chr6 (105-206)||(28755286-28755386)
[»] chr1 (8 HSPs)
chr1 (89-213)||(18253089-18253213)
chr1 (89-213)||(18531537-18531661)
chr1 (89-213)||(27309577-27309701)
chr1 (89-212)||(9075902-9076025)
chr1 (89-179)||(27130442-27130532)
chr1 (81-213)||(16358057-16358191)
chr1 (146-213)||(21169433-21169500)
chr1 (104-206)||(22640882-22640984)
[»] scaffold0390 (2 HSPs)
scaffold0390 (89-206)||(5940-6057)
scaffold0390 (89-204)||(12958-13073)
[»] chr4 (23 HSPs)
chr4 (89-206)||(8859251-8859368)
chr4 (89-206)||(26964630-26964747)
chr4 (89-206)||(26971524-26971641)
chr4 (89-213)||(18270132-18270256)
chr4 (78-213)||(5708385-5708520)
chr4 (89-206)||(55613767-55613884)
chr4 (89-213)||(869680-869804)
chr4 (89-213)||(18263271-18263395)
chr4 (89-213)||(5715032-5715156)
chr4 (78-206)||(10620339-10620467)
chr4 (78-206)||(10627421-10627549)
chr4 (89-213)||(19919530-19919654)
chr4 (89-213)||(19925759-19925883)
chr4 (89-213)||(4425639-4425763)
chr4 (78-213)||(28392166-28392301)
chr4 (90-206)||(47387961-47388077)
chr4 (104-206)||(10676595-10676697)
chr4 (104-206)||(10890235-10890337)
chr4 (90-206)||(35224612-35224728)
chr4 (161-206)||(20579443-20579488)
chr4 (104-159)||(10690368-10690423)
chr4 (104-159)||(10904008-10904063)
chr4 (173-206)||(10825358-10825391)
[»] scaffold0234 (2 HSPs)
scaffold0234 (89-213)||(1343-1467)
scaffold0234 (89-213)||(10236-10360)
[»] scaffold0061 (1 HSPs)
scaffold0061 (89-213)||(5220-5344)
[»] chr8 (10 HSPs)
chr8 (89-213)||(22172544-22172668)
chr8 (89-206)||(21941726-21941843)
chr8 (89-213)||(6095205-6095329)
chr8 (78-213)||(15327271-15327406)
chr8 (78-213)||(15507640-15507775)
chr8 (88-213)||(24644007-24644131)
chr8 (207-310)||(25192092-25192195)
chr8 (89-185)||(28549107-28549203)
chr8 (109-185)||(24796039-24796114)
chr8 (95-185)||(29230479-29230568)
[»] chr7 (10 HSPs)
chr7 (89-213)||(12751918-12752042)
chr7 (89-213)||(29328847-29328971)
chr7 (89-206)||(11535093-11535210)
chr7 (89-213)||(15153526-15153651)
chr7 (89-213)||(12739601-12739725)
chr7 (89-206)||(2653019-2653136)
chr7 (91-206)||(11542011-11542126)
chr7 (89-212)||(9978887-9979010)
chr7 (89-212)||(18562092-18562215)
chr7 (158-212)||(18256843-18256897)
[»] chr5 (7 HSPs)
chr5 (91-206)||(24694491-24694606)
chr5 (78-212)||(19713525-19713659)
chr5 (91-193)||(24701268-24701370)
chr5 (91-213)||(18565480-18565606)
chr5 (89-179)||(19706230-19706320)
chr5 (89-185)||(938602-938700)
chr5 (154-206)||(39539653-39539705)
[»] scaffold0213 (1 HSPs)
scaffold0213 (103-213)||(4313-4423)
[»] scaffold1199 (1 HSPs)
scaffold1199 (93-213)||(188-308)
[»] scaffold0220 (1 HSPs)
scaffold0220 (90-213)||(19373-19496)
[»] scaffold0026 (1 HSPs)
scaffold0026 (93-204)||(26276-26387)
[»] chr2 (4 HSPs)
chr2 (89-213)||(22790857-22790981)
chr2 (78-206)||(41664814-41664941)
chr2 (105-206)||(27353433-27353534)
chr2 (90-182)||(18620896-18620988)
[»] scaffold1303 (1 HSPs)
scaffold1303 (89-213)||(1005-1128)
[»] scaffold0063 (1 HSPs)
scaffold0063 (89-205)||(6587-6703)
[»] scaffold0203 (1 HSPs)
scaffold0203 (119-206)||(29215-29302)
[»] scaffold0008 (1 HSPs)
scaffold0008 (89-212)||(229412-229535)
[»] scaffold0032 (1 HSPs)
scaffold0032 (101-205)||(107279-107383)
[»] scaffold0502 (1 HSPs)
scaffold0502 (89-185)||(105-201)
[»] scaffold0039 (1 HSPs)
scaffold0039 (147-206)||(87829-87887)
[»] scaffold0147 (1 HSPs)
scaffold0147 (248-310)||(8312-8374)


Alignment Details
Target: scaffold0433 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 8167 - 8291
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8167 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 8266  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  8267 ttgctttgctcgtgatcagaaatat 8291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 6e-62; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 6111159 - 6111283
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6111159 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 6111258  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  6111259 ttgctttgctcgtgatcagaaatat 6111283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 13212359 - 13212483
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13212359 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttttgttcgtgtggactgagtagaggcatcgctgct 13212458  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  13212459 ttgctttgctcgtgatcagaaatat 13212483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 89 - 206
Target Start/End: Complemental strand, 15600032 - 15599915
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15600032 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 15599933  T
Q  189 ttgctttgctcgtgatca 206  Q
    ||||||||||||||||||    
T  15599932 ttgctttgctcgtgatca 15599915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 89 - 206
Target Start/End: Complemental strand, 10571714 - 10571597
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10571714 gctctctaaaccttgttctctctgaatcttcgttggaattgactagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 10571615  T
Q  189 ttgctttgctcgtgatca 206  Q
    ||||||||||||||||||    
T  10571614 ttgctttgctcgtgatca 10571597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 89 - 206
Target Start/End: Complemental strand, 10578480 - 10578363
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10578480 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 10578381  T
Q  189 ttgctttgctcgtgatca 206  Q
    ||| ||||||||||||||    
T  10578380 ttgttttgctcgtgatca 10578363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 89 - 206
Target Start/End: Complemental strand, 15606577 - 15606460
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15606577 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcgaagaagttctgttcgtgtggactgagtagaggcatcgctgct 15606478  T
Q  189 ttgctttgctcgtgatca 206  Q
    ||||||||||||||||||    
T  15606477 ttgctttgctcgtgatca 15606460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 89 - 206
Target Start/End: Complemental strand, 16481606 - 16481489
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16481606 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccagtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 16481507  T
Q  189 ttgctttgctcgtgatca 206  Q
    ||||||||||||||||||    
T  16481506 ttgctttgctcgtgatca 16481489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 8491443 - 8491567
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8491443 gctctctaaaccttgttctctctgaatctccgttggaattggctagcaccgatcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 8491542  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  8491543 ttgctttgctcgtgatcagaaatat 8491567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 15341367 - 15341243
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  15341367 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccgatcatcggagaagttctgttcatgtggactgagtagaggcatcgctgct 15341268  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  15341267 ttgctttgctcgtgatcagaaatat 15341243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 15356734 - 15356610
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15356734 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccgatcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 15356635  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    ||||||||||| |||||| ||||||    
T  15356634 ttgctttgctcatgatcagaaatat 15356610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 78 - 206
Target Start/End: Original strand, 18538043 - 18538171
Alignment:
Q  78 ccctagctgttgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagag 177  Q
    ||||||| || ||||||||||| ||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18538043 ccctagccgtcgctctctaaaccttggtctctctgaatctccgtttgaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagag 18538142  T
Q  178 gcatcgctgctttgctttgctcgtgatca 206  Q
    |||||||||||||||||||||||||||||    
T  18538143 gcatcgctgctttgctttgctcgtgatca 18538171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 13517868 - 13517992
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  13517868 gctctctaaacattgttctctttgaatctccgttggaattggctagcaccggtcatcagagaagttatgttcgtgtggactgagtagaggcatcgctgct 13517967  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  13517968 ttgctttgctcgtgatcagaaatat 13517992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 75 - 206
Target Start/End: Complemental strand, 32056207 - 32056076
Alignment:
Q  75 aagccctagctgttgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagta 174  Q
    |||||||||| |  ||||||||||| ||||||||||||||| | ||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  32056207 aagccctagccgccgctctctaaaccttgttctctctgaatttccgttgaaattggctagcaccggtcatcagagaagttctgttcgtgtggaccgagta 32056108  T
Q  175 gaggcatcgctgctttgctttgctcgtgatca 206  Q
    ||||||||||||||||||||||||||||||||    
T  32056107 gaggcatcgctgctttgctttgctcgtgatca 32056076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 17196896 - 17196772
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |    
T  17196896 gctctctaaaccttgttctctttgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaagcatcactgtt 17196797  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    ||||||| |||||||||| ||||||    
T  17196796 ttgctttactcgtgatcagaaatat 17196772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 1646644 - 1646520
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||| ||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||| ||    
T  1646644 gctctctaaaccttgttctctttgaatctccgttagaattggcttgcaccggtcatcggagaagttctgttcgtgtggactaagtagaggtatcgctact 1646545  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||| | ||||||    
T  1646544 ttgctttgctcgtgattagaaatat 1646520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 105 - 213
Target Start/End: Complemental strand, 23014475 - 23014367
Alignment:
Q  105 tctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgat 204  Q
    |||||||||||||  ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  23014475 tctctctgaatctctgttggaattggcttgcaccgatcatcggagaagttctgttcgtgtggactgagtagagacatcgccgctttgctttgctcgtgat 23014376  T
Q  205 cacaaatat 213  Q
    || ||||||    
T  23014375 cataaatat 23014367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 120 - 206
Target Start/End: Original strand, 16201309 - 16201395
Alignment:
Q  120 gttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatca 206  Q
    ||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  16201309 gttggaattggcttgcactggtcatcggataagttctgttcgtgtggactgagtagaggcatcactgctttgcttttctcgtgatca 16201395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 13258661 - 13258728
Alignment:
Q  146 ggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcacaaatat 213  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13258661 ggagaagttttgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcagaaatat 13258728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 17137439 - 17137505
Alignment:
Q  90 ctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttct 156  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||    
T  17137439 ctctctaaactttgttctctttgaatctccgttggaattggctagcaccagtcatcggagaagttct 17137505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 17780246 - 17780187
Alignment:
Q  154 tctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  17780246 tctgttcgtgtggactgagtagaggcatcgctgctttggtttgctcgtgatcagaaatat 17780187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 19081547 - 19081488
Alignment:
Q  154 tctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  19081547 tctgttcgtgtggactgagtagaggcatcgctgctttggtttgctcgtgatcagaaatat 19081488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 206
Target Start/End: Original strand, 25801252 - 25801369
Alignment:
Q  88 tgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgc 187  Q
    ||||||||||||  | |||||||||||||| ||||| ||||| ||||||||  ||| |||| ||||| ||||||||||||||| |||||||| ||||| |    
T  25801252 tgctctctaaaccctattctctctgaatctccgttgaaattgcctagcacca-tcaccggataagttatgttcgtgtggactgggtagaggcgtcgctac 25801350  T
Q  188 tttgctttgctcgtgatca 206  Q
     ||||||||||||| ||||    
T  25801351 attgctttgctcgtaatca 25801369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 54333264 - 54333200
Alignment:
Q  141 tcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatc 205  Q
    ||||| |||||| ||||||||||| |||||||||||| ||||| | ||||| |||||||||||||    
T  54333264 tcatcagagaaggtctgttcgtgtagactgagtagagacatcgttactttgttttgctcgtgatc 54333200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 17690588 - 17690464
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17690588 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 17690489  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  17690488 ttgctttgctcgtgatcagaaatat 17690464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 27278426 - 27278550
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27278426 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 27278525  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||| | ||||||    
T  27278526 ttgctttgctcgtgattagaaatat 27278550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 27297718 - 27297842
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27297718 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 27297817  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||| | ||||||    
T  27297818 ttgctttgctcgtgattagaaatat 27297842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 27303317 - 27303441
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27303317 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 27303416  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||| | ||||||    
T  27303417 ttgctttgctcgtgattagaaatat 27303441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 27380375 - 27380251
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27380375 gctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcagagaagttctgttcgtgtggactgagtagaggcatcgctgct 27380276  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  27380275 ttgctttgctcgtgatcagaaatat 27380251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 27470758 - 27470634
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27470758 gctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcagagaagttctgttcgtgtggactgagtagaggcatcgctgct 27470659  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  27470658 ttgctttgctcgtgatcagaaatat 27470634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 17683605 - 17683481
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17683605 gctctctaaacattgttctctttgaatctccgttggaattggctagcaccggtcatcagagaagttctgttcgtgtggactgagtagaggcatcgctgct 17683506  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  17683505 ttgctttgctcgtgatcagaaatat 17683481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 29309949 - 29310073
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29309949 gctctctaaaccttgttatctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatagctgct 29310048  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  29310049 ttgctttgctcgtgatcagaaatat 29310073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 29316908 - 29317032
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29316908 gctctctaaaccttgttatctctgaatctctgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatagctgct 29317007  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  29317008 ttgctttgctcgtgatcagaaatat 29317032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 11652757 - 11652881
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| || |||| ||||||||| ||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||||    
T  11652757 gctctctaaaccttcttctttctgaatctccgttggaattggctagcaccggtcatcagagaagtacagtttgtgtggactgagtagaggcatcgctgct 11652856  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    ||||||| |||||||||| ||||||    
T  11652857 ttgctttactcgtgatcagaaatat 11652881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 18336648 - 18336765
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| |||||||||||| |||| ||||| | |||||||||||| |||||  |||||||| |||||||||||||||||||||| |||||||       
T  18336648 gctctctaaaccttgttctctctggatctccgttgaagttggctagcaccagtcattagagaagttatgttcgtgtggactgagtagagacatcgctatg 18336747  T
Q  189 ttgctttgctcgtgatca 206  Q
    |||||||||| |||||||    
T  18336748 ttgctttgcttgtgatca 18336765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 105 - 206
Target Start/End: Complemental strand, 28755386 - 28755286
Alignment:
Q  105 tctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgat 204  Q
    ||||||| || |||||||||||||||||||||||| ||||  || ||||||| |||||||||||||||||||| ||| ||| ||||| ||||||||||||    
T  28755386 tctctctcaaccttcgttggaattggctagcaccgatcattaga-aagttctattcgtgtggactgagtagagacattgctactttgatttgctcgtgat 28755288  T
Q  205 ca 206  Q
    ||    
T  28755287 ca 28755286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 18253089 - 18253213
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18253089 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 18253188  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  18253189 ttgctttgctcgtgatcagaaatat 18253213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 18531661 - 18531537
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18531661 gctctctaaaccttcttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactaagtagaggcatcgctgct 18531562  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  18531561 ttgctttgctcgtgatcagaaatat 18531537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 27309701 - 27309577
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||    
T  27309701 gctctctaaaccttgttctctttgaatctccgttgaaattggctagcaccggtcatcggagaggttcttttcgtgtggactgagtagaggcatcgctact 27309602  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  27309601 ttgctttgctcgtgatcagaaatat 27309577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 89 - 212
Target Start/End: Complemental strand, 9076025 - 9075902
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| | ||||||| ||||||| ||||||||||||||||||||| |||| ||||| ||||||||| |||||| |||||||||||| |||||||    
T  9076025 gctctctaaacctcgttctctttgaatctccgttggaattggctagcaccgatcataggagacgttctgttcatgtggaatgagtagaggcaacgctgct 9075926  T
Q  189 ttgctttgctcgtgatcacaaata 212  Q
    |||||||||||||||||| |||||    
T  9075925 ttgctttgctcgtgatcagaaata 9075902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 27130532 - 27130442
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggc 179  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27130532 gctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcttcggagaagttctgttcgtgtggactgagtagaggc 27130442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 81 - 213
Target Start/End: Complemental strand, 16358191 - 16358057
Alignment:
Q  81 tagctgttgctctctaaactttgttctctctgaatcttcgttggaattgg-ctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggc 179  Q
    ||||||| ||||||||||| ||||||||| ||||||  |||||||||||| ||| |||||||| ||||||||||||||||| ||||||||||||||||||    
T  16358191 tagctgtcgctctctaaacgttgttctctttgaatccccgttggaattggtctatcaccggtcttcggagaagttctgttcttgtggactgagtagaggc 16358092  T
Q  180 atcgctgctttgctttgc-tcgtgatcacaaatat 213  Q
    ||||||||||| |||| | ||||||||| ||||||    
T  16358091 atcgctgcttttcttttcttcgtgatcataaatat 16358057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 21169500 - 21169433
Alignment:
Q  146 ggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  21169500 ggagaagttctgttcgtgtggactgagtagaggcatcgttgctttgctttgctcgtgatcagaaatat 21169433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 104 - 206
Target Start/End: Complemental strand, 22640984 - 22640882
Alignment:
Q  104 ttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtga 203  Q
    ||||||||||||||  ||||||||||||||||||  |||||  |||||||||||  ||| ||||| |||||||||||||||| | |||||||||||||||    
T  22640984 ttctctctgaatctctgttggaattggctagcactagtcataagagaagttctgaacgtctggacagagtagaggcatcgctacgttgctttgctcgtga 22640885  T
Q  204 tca 206  Q
    |||    
T  22640884 tca 22640882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 114; Significance: 9e-58; HSPs: 2)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 89 - 206
Target Start/End: Complemental strand, 6057 - 5940
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6057 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 5958  T
Q  189 ttgctttgctcgtgatca 206  Q
    ||||||||||||||||||    
T  5957 ttgctttgctcgtgatca 5940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 13073 - 12958
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13073 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 12974  T
Q  189 ttgctttgctcgtgat 204  Q
    ||||||||||||||||    
T  12973 ttgctttgctcgtgat 12958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 9e-58; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 8859251 - 8859368
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8859251 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 8859350  T
Q  189 ttgctttgctcgtgatca 206  Q
    ||||||||||||||||||    
T  8859351 ttgctttgctcgtgatca 8859368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 26964630 - 26964747
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26964630 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 26964729  T
Q  189 ttgctttgctcgtgatca 206  Q
    ||||||||||||||||||    
T  26964730 ttgctttgctcgtgatca 26964747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 26971524 - 26971641
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26971524 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 26971623  T
Q  189 ttgctttgctcgtgatca 206  Q
    ||||||||||||||||||    
T  26971624 ttgctttgctcgtgatca 26971641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 18270132 - 18270256
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18270132 gctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 18270231  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  18270232 ttgctttgctcgtgatcagaaatat 18270256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 5708385 - 5708520
Alignment:
Q  78 ccctagctgttgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagag 177  Q
    ||||||| | |||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5708385 ccctagccgctgctctctaaacgtagttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagag 5708484  T
Q  178 gcatcgctgctttgctttgctcgtgatcacaaatat 213  Q
    ||||||||||||||||||||||||||||| ||||||    
T  5708485 gcatcgctgctttgctttgctcgtgatcagaaatat 5708520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 55613767 - 55613884
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  55613767 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccagtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 55613866  T
Q  189 ttgctttgctcgtgatca 206  Q
    ||||||||||||||||||    
T  55613867 ttgctttgctcgtgatca 55613884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 869680 - 869804
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  869680 gctctctaaacatagttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 869779  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  869780 ttgctttgctcgtgatcagaaatat 869804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 18263271 - 18263395
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18263271 gctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcggataagttctgttcgtgtggactgagtagaggcatcgctgct 18263370  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  18263371 ttgctttgctcgtgatcagaaatat 18263395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 5715032 - 5715156
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5715032 gctctctaaacgtagttctctctgaatctccgttggaattggctagcactggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 5715131  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  5715132 ttgctttgctcgtgatcagaaatat 5715156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 78 - 206
Target Start/End: Complemental strand, 10620467 - 10620339
Alignment:
Q  78 ccctagctgttgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagag 177  Q
    ||||||| || ||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10620467 ccctagccgtcgctctctaaaccttgttctctctgaatctctgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgaatagag 10620368  T
Q  178 gcatcgctgctttgctttgctcgtgatca 206  Q
    |||||||||||||||||||||||||||||    
T  10620367 gcatcgctgctttgctttgctcgtgatca 10620339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 78 - 206
Target Start/End: Complemental strand, 10627549 - 10627421
Alignment:
Q  78 ccctagctgttgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagag 177  Q
    ||||||| || ||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10627549 ccctagccgtcgctctctaaaccttgttctctctgaatctccattggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgaatagag 10627450  T
Q  178 gcatcgctgctttgctttgctcgtgatca 206  Q
    |||||||||||||||||||||||||||||    
T  10627449 gcatcgctgctttgctttgctcgtgatca 10627421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 19919654 - 19919530
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19919654 gctctctaaaccttcttctctctgaatctccgttgaaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 19919555  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  19919554 ttgctttgctcgtgatcagaaatat 19919530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 19925883 - 19925759
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19925883 gctctctaaaccttcttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcattgctgct 19925784  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  19925783 ttgctttgctcgtgatcagaaatat 19925759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 4425763 - 4425639
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4425763 gctctctaaaccttgttctctttgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactaagtagaggcatcgctgct 4425664  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||| | ||||||    
T  4425663 ttgctttgctcgtgattagaaatat 4425639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 78 - 213
Target Start/End: Complemental strand, 28392301 - 28392166
Alignment:
Q  78 ccctagctgttgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagag 177  Q
    |||||||||  ||||| ||||| || |||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  28392301 ccctagctgccgctctttaaaccttcttctctctgaatctccgttggaattggctagcaccagtcatcggagaagtactgttcgtgtggactgagtagag 28392202  T
Q  178 gcatcgctgctttgctttgctcgtgatcacaaatat 213  Q
    ||||||||||||||||||||||||||||| ||||||    
T  28392201 gcatcgctgctttgctttgctcgtgatcagaaatat 28392166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 90 - 206
Target Start/End: Complemental strand, 47388077 - 47387961
Alignment:
Q  90 ctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctt 189  Q
    |||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||   |    
T  47388077 ctctctaaacctttttctcactgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactaagtagaggcatcgctatgt 47387978  T
Q  190 tgctttgctcgtgatca 206  Q
    |||||||||||||||||    
T  47387977 tgctttgctcgtgatca 47387961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 104 - 206
Target Start/End: Complemental strand, 10676697 - 10676595
Alignment:
Q  104 ttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtga 203  Q
    ||||||||||||||  ||||| ||||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||||| | || ||||||||||||    
T  10676697 ttctctctgaatctctgttggtattggctagaaccggtcatcggagaagttctgtttgtgtggactaaatagaggcatcgctacgttactttgctcgtga 10676598  T
Q  204 tca 206  Q
    |||    
T  10676597 tca 10676595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 104 - 206
Target Start/End: Complemental strand, 10890337 - 10890235
Alignment:
Q  104 ttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtga 203  Q
    ||||||||||||||  ||||| ||||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||||| | || ||||||||||||    
T  10890337 ttctctctgaatctctgttggtattggctagaaccggtcatcggagaagttctgtttgtgtggactaaatagaggcatcgctacgttactttgctcgtga 10890238  T
Q  204 tca 206  Q
    |||    
T  10890237 tca 10890235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 90 - 206
Target Start/End: Original strand, 35224612 - 35224728
Alignment:
Q  90 ctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctt 189  Q
    ||||||||||  | |||| ||||||| | ||||||||||| ||||||| |||||||| ||||| |||||||||||||||||||||||||||||| |   |    
T  35224612 ctctctaaaccctattctttctgaatatccgttggaattgactagcacgggtcatcgaagaagctctgttcgtgtggactgagtagaggcatcgatatct 35224711  T
Q  190 tgctttgctcgtgatca 206  Q
    |||||||||||||||||    
T  35224712 tgctttgctcgtgatca 35224728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 20579488 - 20579443
Alignment:
Q  161 gtgtggactgagtagaggcatcgctgctttgctttgctcgtgatca 206  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  20579488 gtgtggactgaatagaggcatcgctgctttgctttgctcgtgatca 20579443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 10690368 - 10690423
Alignment:
Q  104 ttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgtt 159  Q
    ||||||||||||||  ||||| ||||||||||| ||||||||||||||||||||||    
T  10690368 ttctctctgaatctctgttggtattggctagcatcggtcatcggagaagttctgtt 10690423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 10904008 - 10904063
Alignment:
Q  104 ttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgtt 159  Q
    ||||||||||||||  ||||| ||||||||||| ||||||||||||||||||||||    
T  10904008 ttctctctgaatctctgttggtattggctagcatcggtcatcggagaagttctgtt 10904063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 10825391 - 10825358
Alignment:
Q  173 tagaggcatcgctgctttgctttgctcgtgatca 206  Q
    ||||||||||||||||||||||||||||||||||    
T  10825391 tagaggcatcgctgctttgctttgctcgtgatca 10825358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 1467 - 1343
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1467 gctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 1368  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  1367 ttgctttgctcgtgatcagaaatat 1343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 10360 - 10236
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10360 gctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 10261  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  10260 ttgctttgctcgtgatcagaaatat 10236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 5344 - 5220
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5344 gctctctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 5245  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  5244 ttgctttgctcgtgatcagaaatat 5220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 22172544 - 22172668
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22172544 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcactggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 22172643  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  22172644 ttgctttgctcgtgatcagaaatat 22172668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 21941726 - 21941843
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21941726 gctctctaaaccttgttctctctgaatcttcgttggaattagctagcactggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 21941825  T
Q  189 ttgctttgctcgtgatca 206  Q
    ||||||||||||||||||    
T  21941826 ttgctttgctcgtgatca 21941843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 6095205 - 6095329
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  6095205 gctctctaaaccttcttctctctgaatcttcattggaattggctagcaccggtcatcggagaagttttgttcgtgtggactgagtagaggcatcgctgtt 6095304  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  6095305 ttgctttgctcgtgatcagaaatat 6095329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 15327271 - 15327406
Alignment:
Q  78 ccctagctgttgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagag 177  Q
    |||||||||  ||||||||||  ||||||||| ||||||| ||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||    
T  15327271 ccctagctgccgctctctaaaacttgttctctttgaatctccgttggaattggctagcaccggtcatcggagaatttatgttcatgtggactgagtagag 15327370  T
Q  178 gcatcgctgctttgctttgctcgtgatcacaaatat 213  Q
    ||||||||||||||||||||||||||||| ||||||    
T  15327371 gcatcgctgctttgctttgctcgtgatcagaaatat 15327406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 15507640 - 15507775
Alignment:
Q  78 ccctagctgttgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagag 177  Q
    |||||||||  ||||||||||  ||||||||| ||||||| ||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||    
T  15507640 ccctagctgccgctctctaaaacttgttctctttgaatctccgttggaattggctagcaccggtcatcggagaatttatgttcatgtggactgagtagag 15507739  T
Q  178 gcatcgctgctttgctttgctcgtgatcacaaatat 213  Q
    ||||||||||||||||||||||||||||| ||||||    
T  15507740 gcatcgctgctttgctttgctcgtgatcagaaatat 15507775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 88 - 213
Target Start/End: Original strand, 24644007 - 24644131
Alignment:
Q  88 tgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgc 187  Q
    |||||||||||| | || |||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24644007 tgctctctaaacctagt-ctctctgaatctccgttgtaattggctagcatcggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgc 24644105  T
Q  188 tttgctttgctcgtgatcacaaatat 213  Q
    | ||||||||||||||||| ||||||    
T  24644106 tctgctttgctcgtgatcagaaatat 24644131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 207 - 310
Target Start/End: Complemental strand, 25192195 - 25192092
Alignment:
Q  207 caaatatcttctttttcttctttatgcttgacagataattgttgttgttggtgtaaaagggtttttatttcttggatattaccgaagtaaaagtgaggag 306  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||    
T  25192195 caaatatcttctttttcttctttatgcttgagagataattgttgttgttggtgtaaaagggtcttcatttcttggatattacccaagtaaaagtgaggag 25192096  T
Q  307 aagg 310  Q
    ||||    
T  25192095 aagg 25192092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 89 - 185
Target Start/End: Original strand, 28549107 - 28549203
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgct 185  Q
    ||||||||||| | |||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28549107 gctctctaaacctggttctctctgaatctctgttggaattggctagcactggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgct 28549203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 24796114 - 24796039
Alignment:
Q  109 tctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgct 185  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  24796114 tctgaatcttcgttgaaattagctagcaccggtcatcggagaagttctgttcg-gtggactcagtagaggcatcgct 24796039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 95 - 185
Target Start/End: Original strand, 29230479 - 29230568
Alignment:
Q  95 taaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgct 185  Q
    ||||| ||||||||||| ||||| |||||||||||||||| || | | ||| |||||||||| |||||||||||| |||||||||||||||    
T  29230479 taaaccttgttctctcttaatctccgttggaattggctagtactgtt-atcagagaagttcttttcgtgtggactaagtagaggcatcgct 29230568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 12751918 - 12752042
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12751918 gctctctaaaccttgttctctctaaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggacggagtagaggcatcgctgct 12752017  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  12752018 ttgctttgctcgtgatcagaaatat 12752042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 29328847 - 29328971
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  29328847 gctctctaaaccttgttctctctgaatcttcgttggaattggctagcaccggtcatcagagaagttatgttcgtgtgaactgagtagaggcatcgctgct 29328946  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  29328947 ttgctttgctcgtgatcagaaatat 29328971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 89 - 206
Target Start/End: Complemental strand, 11535210 - 11535093
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11535210 gctctctaaaccttgttctctcttaatcttcgttggaattggctagcaccgatcatcggagaagttctgttcgtgtggactgagtagagacatcgctgct 11535111  T
Q  189 ttgctttgctcgtgatca 206  Q
    ||||||||||||||||||    
T  11535110 ttgctttgctcgtgatca 11535093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 15153526 - 15153651
Alignment:
Q  89 gctctctaaac-tttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgc 187  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  15153526 gctctctaaacatttgttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttttgttcgtgtggactgagtagaggcatcgcttc 15153625  T
Q  188 tttgctttgctcgtgatcacaaatat 213  Q
    ||||||||||||||||||| ||||||    
T  15153626 tttgctttgctcgtgatcagaaatat 15153651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 12739601 - 12739725
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  12739601 gctctctaaaccttgttctctcttaatctccgttggaattggctagcaccggtcatcggagaagttctgtttttgtggactgagtagaggcatcgctgct 12739700  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  12739701 ttgctttgctcgtgatcagaaatat 12739725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 89 - 206
Target Start/End: Complemental strand, 2653136 - 2653019
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||||||| |||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2653136 gctctctaaaccttgttctctctgattctctgttggaattggctagcaccagtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 2653037  T
Q  189 ttgctttgctcgtgatca 206  Q
    ||||||||||||||||||    
T  2653036 ttgctttgctcgtgatca 2653019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 91 - 206
Target Start/End: Complemental strand, 11542126 - 11542011
Alignment:
Q  91 tctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgcttt 190  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  11542126 tctctaaaccttgttctctcttaatcttcgttggaattggctagcaccgatcaccggagaagttctgttcgtgtggactgagtagaggtatcgctgcttt 11542027  T
Q  191 gctttgctcgtgatca 206  Q
    ||||||||||||||||    
T  11542026 gctttgctcgtgatca 11542011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 89 - 212
Target Start/End: Original strand, 9978887 - 9979010
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||  |    
T  9978887 gctctctaaaccttcttctctctgaatcttcgttggaattggctagcaccggtcatcgaaaaagttctgttcgtgtggactaagtagaggcatcgctatt 9978986  T
Q  189 ttgctttgctcgtgatcacaaata 212  Q
    |||||||||||||||||| |||||    
T  9978987 ttgctttgctcgtgatcagaaata 9979010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 89 - 212
Target Start/End: Original strand, 18562092 - 18562215
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||| |    
T  18562092 gctctctaaaccttcttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttatgttcgtgtagactaagtagaggcatcgctgtt 18562191  T
Q  189 ttgctttgctcgtgatcacaaata 212  Q
    |||||||||||||||||| |||||    
T  18562192 ttgctttgctcgtgatcaaaaata 18562215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 18256897 - 18256843
Alignment:
Q  158 ttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatcacaaata 212  Q
    |||||||||||| |||| ||| |||||| | |||||||||||||||||| |||||    
T  18256897 ttcgtgtggactaagtataggtatcgctacgttgctttgctcgtgatcagaaata 18256843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 8e-52; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 91 - 206
Target Start/End: Complemental strand, 24694606 - 24694491
Alignment:
Q  91 tctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgcttt 190  Q
    ||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24694606 tctctaaacctcgttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgcttt 24694507  T
Q  191 gctttgctcgtgatca 206  Q
    ||||||||||||||||    
T  24694506 gctttgctcgtgatca 24694491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 19713659 - 19713525
Alignment:
Q  78 ccctagctgttgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagag 177  Q
    |||||||||  ||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||    
T  19713659 ccctagctgccgctctctaaacctttttctctctgaatctccgttggaattggctagcaccagtcatcggagaagttctgttcatgtggactaagtagag 19713560  T
Q  178 gcatcgctgctttgctttgctcgtgatcacaaata 212  Q
    |||||| || ||||||||||||||||||| |||||    
T  19713559 gcatcgttgttttgctttgctcgtgatcagaaata 19713525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 91 - 193
Target Start/End: Complemental strand, 24701370 - 24701268
Alignment:
Q  91 tctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgcttt 190  Q
    ||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24701370 tctctaaacctcgttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctattcgtgtggactgagtagaggcatcgctgcttt 24701271  T
Q  191 gct 193  Q
    |||    
T  24701270 gct 24701268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 91 - 213
Target Start/End: Complemental strand, 18565606 - 18565480
Alignment:
Q  91 tctctaaactttgttctctctgaatcttcgttggaattggctagcaccggt--catcggagaagttctgttcgtgtggactgagtagaggca--tcgctg 186  Q
    ||||||||| ||||||| | ||||||| |||||||||||||||||||||||  |||| |||||||| |||| ||||||||||||||||||||  ||||||    
T  18565606 tctctaaaccttgttctatttgaatctccgttggaattggctagcaccggtcacatcagagaagttttgtttgtgtggactgagtagaggcatctcgctg 18565507  T
Q  187 ctttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||||| ||||||    
T  18565506 ctttgctttgctcgtgatcagaaatat 18565480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 19706320 - 19706230
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggc 179  Q
    ||||||||||| || |||||||| ||| |  |||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  19706320 gctctctaaaccttcttctctctaaatatctgttgaaattggctagcaccggtcatcggagaagttatgttcgtgtggactaagtagaggc 19706230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 185
Target Start/End: Complemental strand, 938700 - 938602
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatc---ggagaagttctgttcgtgtggactgagtagaggcatcgct 185  Q
    ||||||||||| || |||||||| ||||| ||||||||| |||||||||||||||||   | |||||||||||||||||||| |||||||| ||||||||    
T  938700 gctctctaaaccttattctctct-aatctccgttggaatcggctagcaccggtcatcatcgtagaagttctgttcgtgtggattgagtagaagcatcgct 938602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 39539653 - 39539705
Alignment:
Q  154 tctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatca 206  Q
    |||||| ||||||||||||||||| ||||||| | |||||||||| |||||||    
T  39539653 tctgtttgtgtggactgagtagagacatcgctacgttgctttgcttgtgatca 39539705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 103 - 213
Target Start/End: Original strand, 4313 - 4423
Alignment:
Q  103 gttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtg 202  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4313 gttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtg 4412  T
Q  203 atcacaaatat 213  Q
    |||| ||||||    
T  4413 atcagaaatat 4423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1199 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold1199
Description:

Target: scaffold1199; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 93 - 213
Target Start/End: Original strand, 188 - 308
Alignment:
Q  93 tctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgc 192  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  188 tctaaaccttgttctctctgaatctccgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagagacatcgctgctttgc 287  T
Q  193 tttgctcgtgatcacaaatat 213  Q
    |||||| ||||||| ||||||    
T  288 tttgcttgtgatcagaaatat 308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 90 - 213
Target Start/End: Original strand, 19373 - 19496
Alignment:
Q  90 ctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctt 189  Q
    |||||||||| | ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19373 ctctctaaacgtagttctctctgaatctccgttgtaattggctagcaccggtcatcggagaagttctgttcatgtggactgagtagaggcatcgctgctt 19472  T
Q  190 tgctttgctcgtgatcacaaatat 213  Q
    ||||||||||||||||| ||||||    
T  19473 tgctttgctcgtgatcagaaatat 19496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 93 - 204
Target Start/End: Original strand, 26276 - 26387
Alignment:
Q  93 tctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgc 192  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26276 tctaaactttgttctctctgaatctttgttggaattggctagcaccggtcatcggagaagttttgttcgtgtggactgagtagaggcatcgctgctttgc 26375  T
Q  193 tttgctcgtgat 204  Q
    ||||||| ||||    
T  26376 tttgctcatgat 26387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 22790981 - 22790857
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    |||||||| |||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  22790981 gctctctatactttgttctctttgaatctccgtgggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgcttct 22790882  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    ||||||||||||| |||| ||||||    
T  22790881 ttgctttgctcgtcatcagaaatat 22790857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 78 - 206
Target Start/End: Original strand, 41664814 - 41664941
Alignment:
Q  78 ccctagctgttgctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagag 177  Q
    ||||||| || | ||||||||| |||||||||| |||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||||||| ||||||     
T  41664814 ccctagccgtcgttctctaaaccttgttctctccgaatctccgttggaattggctagcaccgatcatcggggaa-ttctgttcgtgtggactaagtagaa 41664912  T
Q  178 gcatcgctgctttgctttgctcgtgatca 206  Q
    |||||||| | ||||| ||||||||||||    
T  41664913 gcatcgctacgttgctatgctcgtgatca 41664941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 27353433 - 27353534
Alignment:
Q  105 tctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgat 204  Q
    ||||||||||||| || ||||||||||| | |||||||||| |||||||||| | |||||||||||||||||||||||||| | ||||||||||||||||    
T  27353433 tctctctgaatctccgctggaattggctcgtaccggtcatcagagaagttctctacgtgtggactgagtagaggcatcgctacgttgctttgctcgtgat 27353532  T
Q  205 ca 206  Q
    ||    
T  27353533 ca 27353534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 18620896 - 18620988
Alignment:
Q  90 ctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatc 182  Q
    |||||||||||||||||| |||||||||  ||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||| ||||    
T  18620896 ctctctaaactttgttctatctgaatctctgttggaattggctagcaccagtcatcggagaaattctgttcgtgtggactgagtggagacatc 18620988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1303 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 1128 - 1005
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||||| || |||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  1128 gctctctaaacttagt-ctctctgaatcaccgttggaattggctagcaccggtcatcggagaagttatgttcgtgtggactgagtagagacatcgctgct 1030  T
Q  189 ttgctttgctcgtgatcacaaatat 213  Q
    |||||||||||||||||| ||||||    
T  1029 ttgctttgctcgtgatcagaaatat 1005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 89 - 205
Target Start/End: Original strand, 6587 - 6703
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||| ||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||  |    
T  6587 gctctctaaaccttgttctctttgaatctccattggaattggctagcaccagtcatcggagaagttctgttcgtgtggactaagtagaggcatcgctatt 6686  T
Q  189 ttgctttgctcgtgatc 205  Q
    |||||||||||||||||    
T  6687 ttgctttgctcgtgatc 6703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 119 - 206
Target Start/End: Complemental strand, 29302 - 29215
Alignment:
Q  119 cgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatca 206  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29302 cgttggaattggctagcaccggccatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatca 29215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 89 - 212
Target Start/End: Complemental strand, 229535 - 229412
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgct 188  Q
    ||||||||||| ||||||||| ||||||| | ||| || ||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||  |    
T  229535 gctctctaaaccttgttctctttgaatctccattgaaactggctagcaccggtcatcggagaagttctgttcatgtggactaagtataggcatcgctatt 229436  T
Q  189 ttgctttgctcgtgatcacaaata 212  Q
    |||||||||||||||||| |||||    
T  229435 ttgctttgctcgtgatcagaaata 229412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 101 - 205
Target Start/End: Complemental strand, 107383 - 107279
Alignment:
Q  101 ttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcg 200  Q
    ||||||||||||||||| ||||||||||||||  ||| |||||||||||||||||||||||| ||||||  |||||||||| ||| | |||||||||| |    
T  107383 ttgttctctctgaatctccgttggaattggctgacactggtcatcggagaagttctgttcgtttggactatgtagaggcattgctacgttgctttgcttg 107284  T
Q  201 tgatc 205  Q
    |||||    
T  107283 tgatc 107279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 185
Target Start/End: Original strand, 105 - 201
Alignment:
Q  89 gctctctaaactttgttctctctgaatcttcgttggaattggctagcaccggtcatcggagaagttctgttcgtgtggactgagtagaggcatcgct 185  Q
    ||||||||||| |||||||||||| |||| ||||| | |||||||||||| |||||  |||||||| ||||||| |||||||||||||| |||||||    
T  105 gctctctaaaccttgttctctctggatctccgttgaagttggctagcaccagtcattagagaagttatgttcgtatggactgagtagagacatcgct 201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 87829 - 87887
Alignment:
Q  147 gagaagttctgttcgtgtggactgagtagaggcatcgctgctttgctttgctcgtgatca 206  Q
    |||||||| ||||||| |||||| ||||||||||||||| |||| ||||||| |||||||    
T  87829 gagaagttatgttcgt-tggactaagtagaggcatcgctactttactttgcttgtgatca 87887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 310
Target Start/End: Complemental strand, 8374 - 8312
Alignment:
Q  248 ttgttgttggtgtaaaagggtttttatttcttggatattaccgaagtaaaagtgaggagaagg 310  Q
    |||||||||| |||||||||| || ||||||| ||| ||||| ||||| || |||||||||||    
T  8374 ttgttgttggagtaaaagggtcttcatttctttgatgttaccaaagtagaaatgaggagaagg 8312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 7026 times since January 2019
Visitors: 5773