View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0781_low_14 (Length: 336)
Name: NF0781_low_14
Description: NF0781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0781_low_14 |
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| [»] scaffold0153 (1 HSPs) |
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Alignment Details
Target: scaffold0153 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 6 - 317
Target Start/End: Original strand, 36460 - 36771
Alignment:
| Q |
6 |
agcagcagagaaatggaagataacatccaaaatcgnnnnnnnaatagaacttctcgaacaagaaccagaaattgttattcccgttcgatccctttcacat |
105 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36460 |
agcaacagagaaatggaagataacatccaaaatcgtttttttaatagaacttctcgaacaagaaccagaaattgttattcccgttcgatccctttcacat |
36559 |
T |
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| Q |
106 |
tatcgtaaacaaatcagccttccaaaacctcacagaatctctgattttcttcgcaaaaccccaaaactttttgagctctataaggatcgtaatggggtgt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36560 |
tatcgtaaacaaatcagccttccaaaacctcacagaatctctgattttcttcgcaaaaccccaaaactttttgagctctataaggatcgtaatggggtgt |
36659 |
T |
|
| Q |
206 |
tatggtgtggtttgacgcaaaaagctgaagttttgatggaagaacacaaaagggtcattgaggaaaatgaagataaagctgctgaatatgttactaggtt |
305 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36660 |
tatggtgtggtttgacacaaaaagctgaagttttgatggaagaacacaaaagggtcattgaggaaaatgaagataaagctgctgaatatgttactaggtt |
36759 |
T |
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| Q |
306 |
gctgatgatgtc |
317 |
Q |
| |
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||| |||||||| |
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| T |
36760 |
gcttatgatgtc |
36771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 6 - 317
Target Start/End: Original strand, 48661689 - 48662000
Alignment:
| Q |
6 |
agcagcagagaaatggaagataacatccaaaatcgnnnnnnnaatagaacttctcgaacaagaaccagaaattgttattcccgttcgatccctttcacat |
105 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48661689 |
agcaacagagaaatggaagataacatccaaaatcgtttttttaatagaacttctcgaacaagaaccagaaattgttattcccgttcgatccctttcacat |
48661788 |
T |
|
| Q |
106 |
tatcgtaaacaaatcagccttccaaaacctcacagaatctctgattttcttcgcaaaaccccaaaactttttgagctctataaggatcgtaatggggtgt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48661789 |
tatcgtaaacaaatcagccttccaaaacctcacagaatctctgattttcttcgcaaaaccccaaaactttttgagctctataaggatcgtaatggggtgt |
48661888 |
T |
|
| Q |
206 |
tatggtgtggtttgacgcaaaaagctgaagttttgatggaagaacacaaaagggtcattgaggaaaatgaagataaagctgctgaatatgttactaggtt |
305 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48661889 |
tatggtgtggtttgactcaaaaagctgaagttttgatggaagaacacaaaagggtcattgaggaaaatgaagataaagctgctgaatatgttactaggtt |
48661988 |
T |
|
| Q |
306 |
gctgatgatgtc |
317 |
Q |
| |
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||| |||||||| |
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|
| T |
48661989 |
gcttatgatgtc |
48662000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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