View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0781_low_18 (Length: 297)
Name: NF0781_low_18
Description: NF0781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0781_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 12 - 268
Target Start/End: Original strand, 10239478 - 10239734
Alignment:
| Q |
12 |
gattatactgaccagttaacacacgtgctacagccacggatccacgtgccgctaaaccaataagcgagttgaaaccagaaaacacgtttgggagaatttg |
111 |
Q |
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| T |
10239478 |
gattatactgaccagttaacacacgtgctacagccacggatccacgtgccgctaaaccaataagcgagttgaaaccagaaaacacgtttgggagaatttg |
10239577 |
T |
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| Q |
112 |
gtaaccagcttcgttttcgattttgtatttataggtttgaacgtaacggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgccg |
211 |
Q |
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| T |
10239578 |
gtaaccagcttcgttttcgattttgtatttataggtttgaacgtaacggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgccg |
10239677 |
T |
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| Q |
212 |
tcaccgtcaaagagatggtaaggtccacgtggaaggaactgagggtttggtccgttt |
268 |
Q |
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| T |
10239678 |
tcaccgtcaaagagatggtaaggtccacgtggaaggaactgagggtttggtccgttt |
10239734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 10230700 - 10230954
Alignment:
| Q |
14 |
ttatactgaccagttaacacacgtgctacagccacggatccacgtgccgctaaaccaataagcgagttgaaaccagaaaacacgtttgggagaatttggt |
113 |
Q |
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| T |
10230700 |
ttatactgaccggttaacacccgtgctacaaccacggatccacgtgccgctaaagcaataagcgagttgaaaccagaaaacacgtttgggataagttggt |
10230799 |
T |
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| Q |
114 |
aaccagcttcgttttcgattttgtatttataggtttgaacgtaacggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgccgtc |
213 |
Q |
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| T |
10230800 |
gaccagctttgttttcaattttgtacttgtaggtttttacataacggctacatagtgtggctttcccgtttgagattgtaatggcatgaagcatgccgtc |
10230899 |
T |
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| Q |
214 |
accgtcaaagagatggtaaggtccacgtggaaggaactgagggtttggtccgttt |
268 |
Q |
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| T |
10230900 |
accgtcaaagagatggtagggtccacgtggaaggaactgtgggtttggtccgttt |
10230954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 71 - 268
Target Start/End: Complemental strand, 10255068 - 10254871
Alignment:
| Q |
71 |
ataagcgagttgaaaccagaaaacacgtttgggagaatttggtaaccagcttcgttttcgattttgtatttataggtttgaacgtaacggctacatagtg |
170 |
Q |
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| T |
10255068 |
ataagcgagttgaaaccagaaaacacgtttgggataagttggtaaccagcttcgttttcgattttgtatttgtaagtttgaacgtaacggctacagagtg |
10254969 |
T |
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| Q |
171 |
tggcttttccgtttgtgattttaacagcatgaagcatgccgtcaccgtcaaagagatggtaaggtccacgtggaaggaactgagggtttggtccgttt |
268 |
Q |
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| T |
10254968 |
tagcttttccgtttgagattgtaatggcgtgaagcatgccatcaccgtcgaagaggtggtagggtccacgtggaaggaactgtgggtttggtccgttt |
10254871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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