View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0781_low_19 (Length: 294)
Name: NF0781_low_19
Description: NF0781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0781_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 49 - 229
Target Start/End: Complemental strand, 2098371 - 2098191
Alignment:
| Q |
49 |
agctgttgcaaaacaataacatatgttggtaaattgtttagaaaagaaaaatgtataaacaatgaagagtggtggtgagtaaatcttaacaatacctaac |
148 |
Q |
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| T |
2098371 |
agctgttgcaaaacaataacatatgttggtaaattgtttagaaaagaaaaatgtataaacaatgaagagtagtggtgagtaaatcttaacaatatctaac |
2098272 |
T |
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| Q |
149 |
caattaggaagaatatgaaactaaatgaattcagagaagcctttcttttgtctaggaaggggatagtcccatggttgtttt |
229 |
Q |
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| T |
2098271 |
caattaggaagaatatgaaactaaatgaattcagagaagcctttcttttttctaggaaggggatagttccatggttgtttt |
2098191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 51 - 197
Target Start/End: Complemental strand, 2106827 - 2106682
Alignment:
| Q |
51 |
ctgttgcaaaacaataacatatgttggtaaattgtttagaaaagaaaaatgtataaacaatgaagagtggtggtgagtaaatcttaacaatacctaacca |
150 |
Q |
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| T |
2106827 |
ctgttgcaaaacaataacat--gttggtaaattgtttagaaaagaaaaatgtataaaaaatgaagagtagcaatgagtaaatcttaacaatatctaacca |
2106730 |
T |
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| Q |
151 |
attagg-aagaatatgaaactaaatgaattcagagaagcctttctttt |
197 |
Q |
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| T |
2106729 |
attaggaaaggatataaaactaaatgaattcaaaggagcctttttttt |
2106682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 2065606 - 2065558
Alignment:
| Q |
51 |
ctgttgcaaaacaa-taacatatgttggtaaattgtttagaaaagaaaa |
98 |
Q |
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| T |
2065606 |
ctgttgcaaaacaaataacatatgttggtaaattgtttagcaaagaaaa |
2065558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 2047899 - 2047859
Alignment:
| Q |
124 |
tgagtaaatcttaacaatacctaaccaattaggaagaatat |
164 |
Q |
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| T |
2047899 |
tgagtaaatattaacaatatctaaccaattaggaagaatat |
2047859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 2088592 - 2088541
Alignment:
| Q |
51 |
ctgttgcaaaac-aataacatatgttggtaaattgtttagaaaagaaaaatg |
101 |
Q |
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| T |
2088592 |
ctgttgcaaaaccaataacatatcttagtatattgtttagaaaagaaaaatg |
2088541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 2082911 - 2082854
Alignment:
| Q |
139 |
aatacctaaccaattaggaagaatatgaaactaaatgaattcagagaagcctttctttt |
197 |
Q |
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| T |
2082911 |
aatatctaaccaattaggatgaatatg-aactaaatgaatccaaagaaacctttctttt |
2082854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 2135497 - 2135553
Alignment:
| Q |
51 |
ctgttgcaaaacaataacatatgttggtaaattgtttagaaaagaaaaatgtataaa |
107 |
Q |
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| T |
2135497 |
ctgttgcaaagcaataacatatgcgcctaaattgtttaaaaaagaaaaatgcataaa |
2135553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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