View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0781_low_2 (Length: 541)

Name: NF0781_low_2
Description: NF0781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0781_low_2
NF0781_low_2
[»] chr8 (4 HSPs)
chr8 (1-462)||(9231505-9231966)
chr8 (1-203)||(9231385-9231587)
chr8 (1-203)||(9231445-9231647)
chr8 (26-203)||(9231350-9231527)
[»] chr4 (5 HSPs)
chr4 (26-462)||(18350800-18351238)
chr4 (86-462)||(16902202-16902578)
chr4 (1-143)||(18351059-18351203)
chr4 (26-143)||(16902461-16902578)
chr4 (2-83)||(16902461-16902542)
[»] chr2 (6 HSPs)
chr2 (86-462)||(6488489-6488865)
chr2 (86-259)||(18492834-18493007)
chr2 (26-143)||(6488748-6488865)
chr2 (26-143)||(18492834-18492951)
chr2 (1-83)||(6488748-6488830)
chr2 (1-83)||(18492869-18492951)
[»] chr5 (3 HSPs)
chr5 (114-462)||(2914006-2914354)
chr5 (54-136)||(2914272-2914354)
chr5 (8-76)||(2914272-2914340)
[»] chr3 (4 HSPs)
chr3 (177-462)||(17649955-17650239)
chr3 (114-410)||(20635431-20635723)
chr3 (54-143)||(20635431-20635520)
chr3 (1-83)||(20635438-20635520)
[»] scaffold0689 (1 HSPs)
scaffold0689 (367-462)||(1001-1096)


Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 9231505 - 9231966
Alignment:
Q  1 cggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaatcttttgttaaacaagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  9231505 cggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgtttttttctcttttcggatcgtaaatatttctcagaatcttttgttaaacaagg 9231604  T
Q  101 actgtgnnnnnnnctcttttcggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctca 200  Q
    ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||| ||||||||||| ||    
T  9231605 actgtgtttttttctcttttcggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgtttttttctcttttcggatagtaaatatttccca 9231704  T
Q  201 gaaaaatctttctcagaatattgagtatgaatccaatatcgattataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttccctt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9231705 gaaaaatctttctcagaatattgagtatgaatccaatatcgattataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttccctt 9231804  T
Q  301 ctgaatcatccattgcagtaagaacatacttaagaaaatcataattacaggaccttaccgcatattgattattaaagaattgaagtcgatgtgcttttaa 400  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9231805 ctgaatcatcaattccagtaagaacatacttaagaaaatcataattacaggaccttaccgcatattgattattaaagaatcgaagtcgatgtgcttttaa 9231904  T
Q  401 aaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattctcttgat 462  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  9231905 aaaagaggatatcaacgaacttctatgaaatggtttcagcggattccgccaattctcttgat 9231966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 9231385 - 9231587
Alignment:
Q  1 cggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaatcttttgttaaacaagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  9231385 cggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgtttttttctcttttcggatcgtaaatatttctcagaatcttttgttaaacaagg 9231484  T
Q  101 actgtgnnnnnnnctcttttcggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctca 200  Q
    ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  9231485 actgtgtttttttctcttttcggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgtttttttctcttttcggatcgtaaatatttctca 9231584  T
Q  201 gaa 203  Q
    |||    
T  9231585 gaa 9231587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 9231445 - 9231647
Alignment:
Q  1 cggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaatcttttgttaaacaagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  9231445 cggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgtttttttctcttttcggatcgtaaatatttctcagaatcttttgttaaacaagg 9231544  T
Q  101 actgtgnnnnnnnctcttttcggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctca 200  Q
    ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  9231545 actgtgtttttttctcttttcggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgtttttttctcttttcggatcgtaaatatttctca 9231644  T
Q  201 gaa 203  Q
    |||    
T  9231645 gaa 9231647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 9231350 - 9231527
Alignment:
Q  26 ttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgnnnnnnnctcttttcggat 125  Q
    |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  9231350 ttttgttaaacaaggactgtgtttttttctcttttcggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgtttttttctcttttcggat 9231449  T
Q  126 cgtaaatatttctcagaatcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaa 203  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  9231450 cgtaaatatttctcagaatcttttgttaaacaaggactgtgtttttttctcttttcggatcgtaaatatttctcagaa 9231527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 26 - 462
Target Start/End: Complemental strand, 18351238 - 18350800
Alignment:
Q  26 ttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgnnnnnnnctcttttcggat 125  Q
    |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  18351238 ttttgttaaacaaggactgtgtttttttctcttttcggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgtttttttctcttttcggat 18351139  T
Q  126 cgtaaatatttctca-gaat-cttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaaaaatctttctcagaatattg 223  Q
    ||||||||||||||| |||| ||||||||||||||||||||||       |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  18351138 cgtaaatatttctcaagaattcttttgttaaacaaggactgtgtttttttctcttttcggatagtaaatatttcccagaaaaatctttctcagaatattg 18351039  T
Q  224 agtatgaatccaatatcgattataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatccattgcagtaaga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  18351038 agtatgaatccaatatcgattataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatcaattccagtaaga 18350939  T
Q  324 acatacttaagaaaatcataattacaggaccttaccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttc 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  18350938 acatacttaagaaaatcataattacaggaccttaccgcatattgattattaaagaatcgaagtcgatgtgcttttaaaaaagaggatatcaacgaacttc 18350839  T
Q  424 tatgaaatggtttcaggggattccgccaattctcttgat 462  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  18350838 tatgaaatggtttcagcggattccgccaattctcttgat 18350800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 86 - 462
Target Start/End: Complemental strand, 16902578 - 16902202
Alignment:
Q  86 ttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgnnnnnnnctcttttcggat 185  Q
    |||||||||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  16902578 ttttgttaaacaaggactgtgtttttttctctttttggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgtttttttctcttttcggat 16902479  T
Q  186 cgtaaatatttctcagaaaaatctttctcagaatattgagtatgaatccaatatcgattataaaacaaatacatcatctgtgactttaatttgagatact 285  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  16902478 cgtaaatatttcccagaaaaatctttctcagaatattgagtatgaatccaatatcgattataaaacaaatacatcatctgtgagtataatttgagatact 16902379  T
Q  286 catggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaaatcataattacaggaccttaccgcatattgattattaaagaattgaag 385  Q
    |  |||||| |||||||||||||||  ||  || |||||| ||||||| ||||||||||||||||||||| ||||| |||||||||||||||||| ||||    
T  16902378 cggggttctccccttctgaatcatcacttctaggaagaacctacttaaaaaaatcataattacaggacctcaccgcttattgattattaaagaatcgaag 16902279  T
Q  386 tcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattctcttgat 462  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||  |||||||||||||||||||||    
T  16902278 tcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaggtggtttcagcagattccgccaattctcttgat 16902202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 18351203 - 18351059
Alignment:
Q  1 cggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctc-agaa-tcttttgttaaacaa 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| |||| |||||||||||||||    
T  18351203 cggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgtttttttctcttttcggatcgtaaatatttctcaagaattcttttgttaaacaa 18351104  T
Q  99 ggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaa 143  Q
    ||||||||       |||||||||||| ||||||||||| |||||    
T  18351103 ggactgtgtttttttctcttttcggatagtaaatatttcccagaa 18351059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 16902578 - 16902461
Alignment:
Q  26 ttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgnnnnnnnctcttttcggat 125  Q
    |||||||||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  16902578 ttttgttaaacaaggactgtgtttttttctctttttggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgtttttttctcttttcggat 16902479  T
Q  126 cgtaaatatttctcagaa 143  Q
    |||||||||||| |||||    
T  16902478 cgtaaatatttcccagaa 16902461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 16902542 - 16902461
Alignment:
Q  2 ggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaa 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||| |||||    
T  16902542 ggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgtttttttctcttttcggatcgtaaatatttcccagaa 16902461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 86 - 462
Target Start/End: Complemental strand, 6488865 - 6488489
Alignment:
Q  86 ttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgnnnnnnnctcttttcggat 185  Q
    |||||||||||||||||| ||       |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  6488865 ttttgttaaacaaggactatgtttttttctcttttcggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgtttttttctcttttcggat 6488766  T
Q  186 cgtaaatatttctcagaaaaatctttctcagaatattgagtatgaatccaatatcgattataaaacaaatacatcatctgtgactttaatttgagatact 285  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  6488765 cgtaaatatttcccagaaaaatctttctcagaatattgagtatgaatccaatattgattataaaacaaatacatcatatgtgactttaatttgagatact 6488666  T
Q  286 catggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaaatcataattacaggaccttaccgcatattgattattaaagaattgaag 385  Q
    |||||||||||| |||||||||||| |||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  6488665 catggttcttccattctgaatcatcaattctagtaagaacatacttaagaaaatcataagtacaggaccttaccgcatattgattattaaagaatcgaag 6488566  T
Q  386 tcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattctcttgat 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6488565 tcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattttcttgat 6488489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 86 - 259
Target Start/End: Original strand, 18492834 - 18493007
Alignment:
Q  86 ttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgnnnnnnnctcttttcggat 185  Q
    ||||||||||||||||| |||       |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  18492834 ttttgttaaacaaggaccgtgtttttttctcttttcggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgtttttttctcttttcggat 18492933  T
Q  186 cgtaaatatttctcagaaaaatctttctcagaatattgagtatgaatccaatatcgattataaaacaaatacat 259  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18492934 cgtaaatatttcccagaaaaatctttctcagaatattgagtatgaatccaatatcgattataaaacaattacat 18493007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 6488865 - 6488748
Alignment:
Q  26 ttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgnnnnnnnctcttttcggat 125  Q
    |||||||||||||||||| ||       |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  6488865 ttttgttaaacaaggactatgtttttttctcttttcggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgtttttttctcttttcggat 6488766  T
Q  126 cgtaaatatttctcagaa 143  Q
    |||||||||||| |||||    
T  6488765 cgtaaatatttcccagaa 6488748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 18492834 - 18492951
Alignment:
Q  26 ttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgnnnnnnnctcttttcggat 125  Q
    ||||||||||||||||| |||       |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  18492834 ttttgttaaacaaggaccgtgtttttttctcttttcggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgtttttttctcttttcggat 18492933  T
Q  126 cgtaaatatttctcagaa 143  Q
    |||||||||||| |||||    
T  18492934 cgtaaatatttcccagaa 18492951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 6488830 - 6488748
Alignment:
Q  1 cggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaa 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||| |||||    
T  6488830 cggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgtttttttctcttttcggatcgtaaatatttcccagaa 6488748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 18492869 - 18492951
Alignment:
Q  1 cggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaa 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||| |||||    
T  18492869 cggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgtttttttctcttttcggatcgtaaatatttcccagaa 18492951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 114 - 462
Target Start/End: Complemental strand, 2914354 - 2914006
Alignment:
Q  114 ctcttttcggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaaaaatctttct 213  Q
    ||||||||||| | |||||||||||||||||||||||||||| ||||||||||       ||||||||||||  |||||||||  |||||||||||||||    
T  2914354 ctcttttcggaacttaaatatttctcagaatcttttgttaaataaggactgtgtttttttctcttttcggattttaaatattttccagaaaaatctttct 2914255  T
Q  214 cagaatattgagtatgaatccaatatcgattataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatccat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||    
T  2914254 cagaatattgagtatgaatccaatatcgattataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttatgaatcattaat 2914155  T
Q  314 tgcagtaagaacatacttaagaaaatcataattacaggaccttaccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatc 413  Q
    | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2914154 tccagtaaaaacatacttaagaaaatcataattacaggaccttaccgcatattgattattaaagaatcgaagtcgatgtgcttttaaaaaagaggatatc 2914055  T
Q  414 aatgaacttctatgaaatggtttcaggggattccgccaattctcttgat 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2914054 aatgaacttctatgaaatggtttcaggggattccgccaattctcttgat 2914006  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 2914354 - 2914272
Alignment:
Q  54 ctcttttcggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatattt 136  Q
    ||||||||||| | |||||||||||||||||||||||||||| ||||||||||       ||||||||||||  |||||||||    
T  2914354 ctcttttcggaacttaaatatttctcagaatcttttgttaaataaggactgtgtttttttctcttttcggattttaaatattt 2914272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 2914340 - 2914272
Alignment:
Q  8 taaatatttctcagaatcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatattt 76  Q
    |||||||||||||||||||||||||||| ||||||||||       ||||||||||||  |||||||||    
T  2914340 taaatatttctcagaatcttttgttaaataaggactgtgtttttttctcttttcggattttaaatattt 2914272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 177 - 462
Target Start/End: Original strand, 17649955 - 17650239
Alignment:
Q  177 ttttcggatcgtaaatatttctcagaaaaatctttctcagaatattgagtatgaatccaatatcgattataaaacaaatacatcatctgtgactttaatt 276  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  17649955 ttttcggatcgtaaatatttc-cagaaaaatctttctcagaatattgagtatgaatccaatatcaattataaaacaaatacatcatctgtgactttaatc 17650053  T
Q  277 tgagatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaaatcataattacaggaccttaccgcatattgattattaaa 376  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  17650054 tgagatactcatggttcttcccttctgaatcatcaattccagtaagaacatacttaagaaaatcatagttacatgaccttaccgcatattgattattaaa 17650153  T
Q  377 gaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattctcttgat 462  Q
    |||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17650154 gaatcgaagttgatgtgcttttagaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattctcttgat 17650239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 114 - 410
Target Start/End: Original strand, 20635431 - 20635723
Alignment:
Q  114 ctcttttcggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaaaaatctttct 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||| |||||||||||||||    
T  20635431 ctcttttcggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgtttttttctcttttcggatcgtaaatatttcccagaaaaatctttct 20635530  T
Q  214 cagaatattgagtatgaatccaatatcgattataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatccat 313  Q
    || |||||| ||||||||||||||||||||||| ||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||| ||    
T  20635531 caaaatatttagtatgaatccaatatcgattatgaaacaaatacatcatc----actttaatttgagatactcatggttcttcccttctgaatcatcaat 20635626  T
Q  314 tgcagtaagaacatacttaagaaaatcataattacaggaccttaccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggat 410  Q
    | ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20635627 ttcagtaagaacatatttaagaaaatcataattacatgaccttaccgcatattgattattaaagaatcgaagtcgatgtgcttttaaaaaagaggat 20635723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 20635431 - 20635520
Alignment:
Q  54 ctcttttcggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaa 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||| |||||    
T  20635431 ctcttttcggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgtttttttctcttttcggatcgtaaatatttcccagaa 20635520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 20635438 - 20635520
Alignment:
Q  1 cggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaa 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||| |||||    
T  20635438 cggatcgtaaatatttctcagaatcttttgttaaacaaggactgtgtttttttctcttttcggatcgtaaatatttcccagaa 20635520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0689 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0689
Description:

Target: scaffold0689; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 367 - 462
Target Start/End: Complemental strand, 1096 - 1001
Alignment:
Q  367 gattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattctcttgat 462  Q
    ||||||| |||||| ||||||||| ||||||  ||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||    
T  1096 gattattcaagaatcgaagtcgatttgctttataaaaagaagatatcaatgaacttctatgaaatggtttcacgggattcagccaattgtcttgat 1001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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