View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0781_low_22 (Length: 274)
Name: NF0781_low_22
Description: NF0781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0781_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 37 - 222
Target Start/End: Original strand, 37717725 - 37717910
Alignment:
| Q |
37 |
atatattataaggcatctcaaacctgaaagaatgattattatataatatggaataaaaggtaataaaataaaatagcccagattggaaaaggaggccaac |
136 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37717725 |
atatattataaggcatctcaaacctgaaagaatgatcattatataatatggaataaaaggtaataaaataaaatagcccagattggaaaaggaggccaac |
37717824 |
T |
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| Q |
137 |
tggttcagctctttcaggtgtacacacaaatctaaattaaagcatgcagtgaaatacacaaaccatataacacgccagtaagtaac |
222 |
Q |
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| T |
37717825 |
tggttcagctctttcaggtgtacacacaaatctaaattaaagcatgcagtgaaatacacaaaccatataacacgccagtaagtaac |
37717910 |
T |
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Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 37 - 220
Target Start/End: Complemental strand, 4437435 - 4437252
Alignment:
| Q |
37 |
atatattataaggcatctcaaacctgaaagaatgattattatataatatggaataaaaggtaataaaataaaatagcccagattggaaaaggaggccaac |
136 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4437435 |
atatattataaggcatctcaaacctgaaagaatgatcattatataatatggaataaaaggtaataaaataaaatagcccagattggaaaaggaggccaac |
4437336 |
T |
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| Q |
137 |
tggttcagctctttcaggtgtacacacaaatctaaattaaagcatgcagtgaaatacacaaaccatataacacgccagtaagta |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4437335 |
tggttcagctctttcaggtgtacacacaaatctaaattaaagcatgcagtgaaatacacaaaccatataacacgccagtaagta |
4437252 |
T |
|
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Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 37 - 220
Target Start/End: Original strand, 46593403 - 46593586
Alignment:
| Q |
37 |
atatattataaggcatctcaaacctgaaagaatgattattatataatatggaataaaaggtaataaaataaaatagcccagattggaaaaggaggccaac |
136 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46593403 |
atatattataaggcatctcaaacctgaaagaatgatcattatataatatggaataaaaggtaataaaataaaatagcccagattggaaaaggaggccaac |
46593502 |
T |
|
| Q |
137 |
tggttcagctctttcaggtgtacacacaaatctaaattaaagcatgcagtgaaatacacaaaccatataacacgccagtaagta |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46593503 |
tggttcagctctttcaggtgtacacacaaatctaaattaaagcatgcagtgaaatacacaaaccatataacacgccagtaagta |
46593586 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 37 - 206
Target Start/End: Original strand, 42078268 - 42078437
Alignment:
| Q |
37 |
atatattataaggcatctcaaacctgaaagaatgattattatataatatggaataaaaggtaataaaataaaatagcccagattggaaaaggaggccaac |
136 |
Q |
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||||||| |||||||||||||||||||||||||| |||| || ||||||||||| ||||||||||||||||||||||||||||||||| || |||||| |
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| T |
42078268 |
atatattgtaaggcatctcaaacctgaaagaatgggcattagatgatatggaataataggtaataaaataaaatagcccagattggaaaatgaagccaac |
42078367 |
T |
|
| Q |
137 |
tggttcagctctttcaggtgtacacacaaatctaaattaaagcatgcagtgaaatacacaaaccatataa |
206 |
Q |
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|||||||||||||||| |||||||||| || ||||||||||||||||| | ||||||| |||||||||| |
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| T |
42078368 |
tggttcagctctttcaagtgtacacacgaagctaaattaaagcatgcactcaaatacaagaaccatataa |
42078437 |
T |
|
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