View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0781_low_26 (Length: 262)

Name: NF0781_low_26
Description: NF0781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0781_low_26
NF0781_low_26
[»] chr1 (1 HSPs)
chr1 (30-262)||(36314600-36314832)
[»] chr8 (19 HSPs)
chr8 (69-262)||(19390519-19390712)
chr8 (55-262)||(19345105-19345312)
chr8 (45-262)||(19410716-19410933)
chr8 (45-262)||(19457735-19457952)
chr8 (45-262)||(19523126-19523343)
chr8 (52-262)||(19504028-19504238)
chr8 (69-262)||(19337389-19337582)
chr8 (100-262)||(19468610-19468772)
chr8 (100-262)||(19555531-19555693)
chr8 (78-258)||(19469524-19469704)
chr8 (78-258)||(19540448-19540628)
chr8 (78-258)||(19592070-19592250)
chr8 (69-262)||(19355409-19355602)
chr8 (82-262)||(19376553-19376733)
chr8 (87-250)||(19172821-19172984)
chr8 (100-262)||(19404684-19404846)
chr8 (87-262)||(19287650-19287825)
chr8 (112-245)||(19370913-19371046)
chr8 (112-245)||(19341133-19341266)
[»] chr6 (1 HSPs)
chr6 (87-262)||(19543002-19543177)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 30 - 262
Target Start/End: Original strand, 36314600 - 36314832
Alignment:
Q  30 ttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaa 129  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314600 ttcaacaccacttgttaacttgcccttcgaggatagctcccatcatataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaa 36314699  T
Q  130 acaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttccaatacactttgccgcgtt 229  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36314700 acaataatgtactgatacatatgttgaacattcactggaatgttctcgaacattccattgcttttaagttttccacttttccaatacactttcccgcgtt 36314799  T
Q  230 ttttgatgttcaattcaccttgttttggttccc 262  Q
    |||||||||||||||||||||||||||||||||    
T  36314800 ttttgatgttcaattcaccttgttttggttccc 36314832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 8e-70; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 69 - 262
Target Start/End: Complemental strand, 19390712 - 19390519
Alignment:
Q  69 ccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattgga 168  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||| ||||||||||| ||||| ||| ||||||||||||  |||    
T  19390712 ccatcgtataaacttcccatctttaacttcgaaagcaaaagaatcttcatccttgttagagacaataatgtattgatatatacgttgaacattcaccgga 19390613  T
Q  169 atgttctcgaacattccattgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttgttttggttccc 262  Q
    ||||||||||| |  |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  19390612 atgttctcgaataaaccattgcttttaagttttccgcttttccaatacactttgccgcgtttcttgatgttcaattccccttgttttggttccc 19390519  T

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Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 55 - 262
Target Start/End: Complemental strand, 19345312 - 19345105
Alignment:
Q  55 ttcgaggatagctcccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgtt 154  Q
    ||||||| ||| | |||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||    
T  19345312 ttcgaggttagttgccatcgtgcaaacttcccatctttaacttcgaaagcgaaagaatcttcattcttgttagagacaataatgtactgatatatacgtt 19345213  T
Q  155 gaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttgttt 254  Q
    |||| ||| | |||||||||||||| ||||||||||| ||||||||||| |||||||||||| || |||||| ||| ||||||||||||||||||| |||    
T  19345212 gaactttcgtgggaatgttctcgaatattccattgctattaagttttccgcttttccaatacgctatgccgcttttcttgatgttcaattcaccttcttt 19345113  T
Q  255 tggttccc 262  Q
    ||||||||    
T  19345112 tggttccc 19345105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 45 - 262
Target Start/End: Complemental strand, 19410933 - 19410716
Alignment:
Q  45 taacttgcccttcgaggatagctcccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactga 144  Q
    |||||| |||||||||||||| |||||| ||  ||||||||||||||||||||| || | |||||||||||||| ||||||||| |||||||||||||||    
T  19410933 taacttccccttcgaggatagttcccattgtgcaaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactga 19410834  T
Q  145 tacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaatt 244  Q
    ||| ||  |||||||||    ||||| |||||||| | ||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||    
T  19410833 tacctactttgaacattggccggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttttcttgatgttcaatt 19410734  T
Q  245 caccttgttttggttccc 262  Q
    ||||||||||||||||||    
T  19410733 caccttgttttggttccc 19410716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 45 - 262
Target Start/End: Complemental strand, 19457952 - 19457735
Alignment:
Q  45 taacttgcccttcgaggatagctcccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactga 144  Q
    |||||| |||||||||||||| |||||| ||  ||||||||||||||||||||| || | |||||||||||||| ||||||||| |||||||||||||||    
T  19457952 taacttccccttcgaggatagttcccattgtgcaaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactga 19457853  T
Q  145 tacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaatt 244  Q
    ||| ||  |||||||||    ||||| |||||||| | ||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||    
T  19457852 tacctactttgaacattggccggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttttcttgatgttcaatt 19457753  T
Q  245 caccttgttttggttccc 262  Q
    ||||||||||||||||||    
T  19457752 caccttgttttggttccc 19457735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 45 - 262
Target Start/End: Original strand, 19523126 - 19523343
Alignment:
Q  45 taacttgcccttcgaggatagctcccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactga 144  Q
    |||||| |||||||||||||| |||||| ||  ||||||||||||||||||||| || | |||||||||||||| ||||||||| |||||||||||||||    
T  19523126 taacttccccttcgaggatagttcccattgtgcaaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactga 19523225  T
Q  145 tacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaatt 244  Q
    ||| ||  |||||||||    ||||| |||||||| | ||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||    
T  19523226 tacctactttgaacattggccggaatattctcgaataatccattgcttttaagttttccgcttttccaatacactttgccgcttttcttgatgttcaatt 19523325  T
Q  245 caccttgttttggttccc 262  Q
    ||||||||||||||||||    
T  19523326 caccttgttttggttccc 19523343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 52 - 262
Target Start/End: Original strand, 19504028 - 19504238
Alignment:
Q  52 cccttcgaggatagctcccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatat 151  Q
    |||||||||| ||| | |||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||     
T  19504028 cccttcgaggttagttgccatcgtgcaaacttcccatctttaacttcgaaagcgaaagaatcttcattcttgttagagacaataatgtactgatatatac 19504127  T
Q  152 gttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttg 251  Q
    ||||||| ||  | |||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| |||  | ||||||||||||| ||     
T  19504128 gttgaacttttgtgggaatgttctcgaatattccattgcttttaagttttccgcttttccaatgcactttgccgcttttccttatgttcaattcacgttc 19504227  T
Q  252 ttttggttccc 262  Q
    |||||||||||    
T  19504228 ttttggttccc 19504238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 69 - 262
Target Start/End: Complemental strand, 19337582 - 19337389
Alignment:
Q  69 ccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattgga 168  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| || ||| ||||||| |||   |||    
T  19337582 ccatcgtataaatttcccatctttaacttcaaaagcaaaagaatcttcatccttgttagacacaataatgtactggtatatacgttgaactttcgcagga 19337483  T
Q  169 atgttctcgaacattccattgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttgttttggttccc 262  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| | |||  |||||||||||||||||| |||||||||||    
T  19337482 atgttctcgaacattccattgcttttgagttttccacttttccaatgcactttgccacttttcctgatgttcaattcaccttcttttggttccc 19337389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 19468610 - 19468772
Alignment:
Q  100 aaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagtt 199  Q
    |||| |||||||||||| |  |||||||| ||||||||||||||||||||||||||||||||||  ||||| |||||||| | |||||||||||||||||    
T  19468610 aaagtgaaagaatcttcgtctttgttagagacaataatgtactgatacatatgttgaacattcaccggaatattctcgaataatccattgcttttaagtt 19468709  T
Q  200 ttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttgttttggttccc 262  Q
    |||| |||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||    
T  19468710 ttccgcttttccaatacactttgccgcttttcttgatgatcaattcaccttgttttggttccc 19468772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 19555531 - 19555693
Alignment:
Q  100 aaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagtt 199  Q
    |||| |||||||||||| |  |||||||| ||||||||||||||||||||||||||||||||||  ||||| |||||||| | |||||||||||||||||    
T  19555531 aaagtgaaagaatcttcgtctttgttagagacaataatgtactgatacatatgttgaacattcaccggaatattctcgaataatccattgcttttaagtt 19555630  T
Q  200 ttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttgttttggttccc 262  Q
    |||| |||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||    
T  19555631 ttccgcttttccaatacactttgccgcttttcttgatgatcaattcaccttgttttggttccc 19555693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 78 - 258
Target Start/End: Original strand, 19469524 - 19469704
Alignment:
Q  78 aaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcg 177  Q
    ||||||||||||||||||||| || | |||||||||||||| ||||||||| |||||||||||||||||| ||| |||||||||    ||||| ||||||    
T  19469524 aaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggccggaatattctcg 19469623  T
Q  178 aacattccattgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttgttttggt 258  Q
    || | ||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||| |||| |||||||    
T  19469624 aataatccattgcttttaagttttccgcttttccaatacactttgccgcttttcttgatgttcaattctccttcttttggt 19469704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 78 - 258
Target Start/End: Original strand, 19540448 - 19540628
Alignment:
Q  78 aaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcg 177  Q
    ||||||||||||||||||||| || | |||||||||||||| ||||||||| |||||||||||||||||| ||| |||||||||    ||||| ||||||    
T  19540448 aaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggccggaatattctcg 19540547  T
Q  178 aacattccattgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttgttttggt 258  Q
    || | ||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||| |||| |||||||    
T  19540548 aataatccattgcttttaagttttccgcttttccaatacactttgccgcttttcttgatgttcaattctccttcttttggt 19540628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 78 - 258
Target Start/End: Complemental strand, 19592250 - 19592070
Alignment:
Q  78 aaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcg 177  Q
    ||||||||||||||||||||| || | |||||||||||||| ||||||||| |||||||||||||||||| ||| |||||||||    ||||| ||||||    
T  19592250 aaacttcccatctttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggccggaatattctcg 19592151  T
Q  178 aacattccattgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttgttttggt 258  Q
    || | ||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||| |||| |||||||    
T  19592150 aataatccattgcttttaagttttccgcttttccaatacactttgccgcttttcttgatgttcaattctccttcttttggt 19592070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 69 - 262
Target Start/End: Complemental strand, 19355602 - 19355409
Alignment:
Q  69 ccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattgga 168  Q
    |||||||||||| |||||||| |||||||| ||||| ||||||||||||| ||||||||| |||||||||||| |||| |||  |||||| |||  ||||    
T  19355602 ccatcgtataaaattcccatcattaacttcgaaagcaaaagaatcttcatccttgttagacacaataatgtaccgatatatactttgaactttcgctgga 19355503  T
Q  169 atgttctcgaacattccattgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttgttttggttccc 262  Q
    ||||||||||| |||||||| ||| |||||||||| |||||||||| ||||||||||| |||  | |||||||||||||||| |||||||||||    
T  19355502 atgttctcgaatattccattacttctaagttttccgcttttccaatgcactttgccgcttttccttatgttcaattcaccttcttttggttccc 19355409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 82 - 262
Target Start/End: Complemental strand, 19376733 - 19376553
Alignment:
Q  82 ttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaaca 181  Q
    |||| |||||||| |||||||   || |||||||||| ||||||||| ||||| |||||| ||||||||| |||||||||    ||||| |||||||| |    
T  19376733 ttccgatctttaatttcaaaactaaaggaatcttcatccttgttagagacaatgatgtaccgatacatattttgaacattggccggaatattctcgaata 19376634  T
Q  182 ttccattgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttgttttggttccc 262  Q
     ||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||    
T  19376633 atccattgcttttaagttttccgcttttccaatacactttgccgcttttcttgatgttcagttcaccttgttttggttccc 19376553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 87 - 250
Target Start/End: Original strand, 19172821 - 19172984
Alignment:
Q  87 atctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattcca 186  Q
    |||||| | ||| |||| ||| || ||||||| ||||||||| ||||||||||| ||||||| ||||||||| |||| | ||||||||| ||| | ||||    
T  19172821 atctttgatttcgaaagtgaaggagtcttcatccttgttagagacaataatgtattgatacacatgttgaactttcactagaatgttcttgaataatcca 19172920  T
Q  187 ttgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaattcacctt 250  Q
    ||||| ||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||    
T  19172921 ttgctgttaagttttccgcttttccaatacactttgccgcgttgcttgatgttcaattcacctt 19172984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 100 - 262
Target Start/End: Complemental strand, 19404846 - 19404684
Alignment:
Q  100 aaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagtt 199  Q
    |||| |||||||||||||| ||||||||| |||||| |||| |||||||||  |||||||||    ||||| |||||||| | ||||| |||||||||||    
T  19404846 aaagtgaaagaatcttcatccttgttagagacaatagtgtattgatacatagtttgaacattggccggaatattctcgaataatccatcgcttttaagtt 19404747  T
Q  200 ttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttgttttggttccc 262  Q
    |||| |||||||||||||||||||| | ||| |||||||||| ||||||||||||||||||||    
T  19404746 ttccgcttttccaatacactttgcctcttttcttgatgttcagttcaccttgttttggttccc 19404684  T

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Target: chr8; HSP #17
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 87 - 262
Target Start/End: Complemental strand, 19287825 - 19287650
Alignment:
Q  87 atctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattcca 186  Q
    |||||| | ||| |||| ||| || ||||||| ||||||||| ||||||||||| ||||||| | ||||||| |||| ||||||||||||||| |  |||    
T  19287825 atctttgatttcgaaagtgaaggagtcttcatccttgttagagacaataatgtattgatacacacgttgaactttcactggaatgttctcgaataaacca 19287726  T
Q  187 ttgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttgttttggttccc 262  Q
    |||| | || ||||||| |||||||||||||||||||||||||  ||||||||||||||||||| ||| |||||||    
T  19287725 ttgcgtctacgttttccgcttttccaatacactttgccgcgttgcttgatgttcaattcaccttctttaggttccc 19287650  T

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Target: chr8; HSP #18
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 112 - 245
Target Start/End: Complemental strand, 19371046 - 19370913
Alignment:
Q  112 tcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttcc 211  Q
    |||||||  |||||||| ||||| |||||  |||||| |||||| ||||||  ||||||||||||||| | |||||||||| ||||||||||||||||||    
T  19371046 tcttcatctttgttagagacaatcatgtatcgatacacatgttggacattctctggaatgttctcgaataatccattgcttctaagttttccacttttcc 19370947  T
Q  212 aatacactttgccgcgttttttgatgttcaattc 245  Q
    ||| |||||||||  |||| || |||||||||||    
T  19370946 aatgcactttgccttgtttcttaatgttcaattc 19370913  T

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Target: chr8; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 112 - 245
Target Start/End: Complemental strand, 19341266 - 19341133
Alignment:
Q  112 tcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttcc 211  Q
    |||||||  |||||||| ||||| |||||  |||||| |||||| ||||||  | ||||||||||||| | ||||||||||  |||||||||||||||||    
T  19341266 tcttcatctttgttagagacaatcatgtatcgatacacatgttggacattctctagaatgttctcgaataatccattgcttccaagttttccacttttcc 19341167  T
Q  212 aatacactttgccgcgttttttgatgttcaattc 245  Q
    ||| |||||||||  |||| || |||||||||||    
T  19341166 aatgcactttgccttgtttcttaatgttcaattc 19341133  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 87 - 262
Target Start/End: Complemental strand, 19543177 - 19543002
Alignment:
Q  87 atctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattcca 186  Q
    |||||||| || |||||  || ||||||||||  || ||||||||||||||||| | ||||| | |||||||||||   || |||||| |||| |  |||    
T  19543177 atctttaattttaaaagtaaaggaatcttcatctttcttagaaacaataatgtattcatacacacgttgaacattcgccggtatgttcacgaataaccca 19543078  T
Q  187 ttgcttttaagttttccacttttccaatacactttgccgcgttttttgatgttcaattcaccttgttttggttccc 262  Q
    || ||| |||||||||| |||||||||||||||||||||| ||| ||||| | |||||||| ||| ||||||||||    
T  19543077 tttcttctaagttttccgcttttccaatacactttgccgcttttcttgatttccaattcacgttgctttggttccc 19543002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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