View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0781_low_3 (Length: 497)
Name: NF0781_low_3
Description: NF0781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0781_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 94 - 497
Target Start/End: Original strand, 2836140 - 2836532
Alignment:
| Q |
94 |
gttcttgtcctttgtcttttgacgggtatatttgctggggctgttcttgactggttgtggatcataggcaaagattcattctaaacatacacaaatatcc |
193 |
Q |
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| T |
2836140 |
gttcttgtcctttgtcttttgacgggtatatttactggggctgttcttgactggttgtggatcataggcaaagattcattctaaacatacaccaatatcc |
2836239 |
T |
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| Q |
194 |
attctaaattgttcgatcatacaggtcagagaagagaaactgaaatgtttaaaactggttcaattagtttctcatatatgacctttgcgattgaacaatt |
293 |
Q |
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| T |
2836240 |
attctaaattgttcgatcatacaggtcagagaagagaaactgaaatgtttaaaactggttcaattagt-----------gacctttgcgattgaacaatt |
2836328 |
T |
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| Q |
294 |
ttaaacatttgttccctacacttttacttgtatgaatgattacaatctctagaattaattagtaaaaacttttcctgtaaagattttttatggtattaaa |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2836329 |
ttaaacatttgttccctacacttttacttgtatgaatgattacaatctctagaattaattagtacaaacttttcctgtaaagattttttatggtattaaa |
2836428 |
T |
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| Q |
394 |
caaggctagttctaatgtgtacaaaccatgtagattgtgcaaggtaagcaactattttcgtccatatgattgaacagtttcatagatcaaaaggtgattc |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2836429 |
caaggctagttctaatgtgtacaaaccatgtagattgtgcaaggtaagcaactattttcgtccatatgattgaacagtttcatagatcaaaaggtgattc |
2836528 |
T |
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