View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0781_low_37 (Length: 203)

Name: NF0781_low_37
Description: NF0781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0781_low_37
NF0781_low_37
[»] chr5 (5 HSPs)
chr5 (5-93)||(3639824-3639912)
chr5 (5-75)||(25586985-25587054)
chr5 (5-75)||(30485881-30485950)
chr5 (5-75)||(38684261-38684330)
chr5 (23-75)||(27487630-27487681)
[»] chr2 (8 HSPs)
chr2 (8-75)||(14946835-14946902)
chr2 (10-105)||(24196062-24196156)
chr2 (5-75)||(15038012-15038081)
chr2 (5-75)||(17324819-17324888)
chr2 (5-75)||(27290641-27290710)
chr2 (5-75)||(30466905-30466974)
chr2 (5-75)||(44946128-44946197)
chr2 (26-75)||(34516488-34516536)
[»] chr4 (10 HSPs)
chr4 (32-75)||(53787132-53787175)
chr4 (5-75)||(5609277-5609346)
chr4 (5-75)||(33992679-33992748)
chr4 (5-75)||(34844833-34844902)
chr4 (5-75)||(40058927-40058996)
chr4 (3-75)||(32990486-32990557)
chr4 (36-75)||(13771557-13771596)
chr4 (32-75)||(34835609-34835651)
chr4 (5-75)||(25852267-25852336)
chr4 (5-75)||(27528870-27528939)
[»] chr8 (9 HSPs)
chr8 (5-75)||(27746410-27746479)
chr8 (10-75)||(21667612-21667676)
chr8 (32-75)||(28964117-28964159)
chr8 (5-75)||(3734698-3734767)
chr8 (5-75)||(4718702-4718771)
chr8 (5-75)||(6953082-6953151)
chr8 (5-75)||(15259481-15259550)
chr8 (5-75)||(34237730-34237799)
chr8 (5-75)||(39349313-39349382)
[»] chr6 (6 HSPs)
chr6 (5-75)||(11448924-11448993)
chr6 (3-75)||(34147397-34147468)
chr6 (3-75)||(34160013-34160084)
chr6 (5-75)||(654221-654290)
chr6 (5-75)||(12390478-12390547)
chr6 (5-75)||(15360173-15360242)
[»] chr3 (11 HSPs)
chr3 (5-75)||(30257677-30257746)
chr3 (10-75)||(18176962-18177026)
chr3 (3-72)||(53233988-53234056)
chr3 (32-75)||(45272491-45272533)
chr3 (5-75)||(8456225-8456294)
chr3 (5-75)||(26108345-26108414)
chr3 (5-75)||(30807228-30807297)
chr3 (5-75)||(35492964-35493033)
chr3 (5-75)||(40133524-40133593)
chr3 (5-75)||(40940878-40940947)
chr3 (10-55)||(49167114-49167159)
[»] chr1 (9 HSPs)
chr1 (5-75)||(8077700-8077769)
chr1 (5-75)||(9500430-9500499)
chr1 (5-75)||(15059477-15059546)
chr1 (5-75)||(4621312-4621381)
chr1 (5-75)||(7766802-7766871)
chr1 (5-75)||(8254827-8254896)
chr1 (5-75)||(24122076-24122145)
chr1 (5-75)||(24674446-24674515)
chr1 (3-47)||(12993954-12993998)
[»] scaffold0576 (1 HSPs)
scaffold0576 (5-75)||(5157-5226)
[»] scaffold0070 (1 HSPs)
scaffold0070 (5-75)||(40378-40447)
[»] chr7 (7 HSPs)
chr7 (5-75)||(654779-654848)
chr7 (5-75)||(2751328-2751397)
chr7 (5-75)||(7175937-7176006)
chr7 (5-75)||(7275334-7275403)
chr7 (5-75)||(22119945-22120014)
chr7 (5-75)||(40542985-40543054)
chr7 (10-75)||(21835213-21835277)
[»] scaffold0019 (1 HSPs)
scaffold0019 (5-74)||(161862-161930)


Alignment Details
Target: chr5 (Bit Score: 89; Significance: 4e-43; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 3639824 - 3639912
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggctttagctcagccccgcaagtgg 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3639824 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggctttagctcagccccgcaagtgg 3639912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 25586985 - 25587054
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  25586985 gtctcaggttcgatttcctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 25587054  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 30485881 - 30485950
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  30485881 gtctcaggttcgattcactctggtgtcaatttcggtgggctaagtccatacagagct-tgctctggcttta 30485950  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 38684261 - 38684330
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  38684261 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 38684330  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 27487681 - 27487630
Alignment:
Q  23 tttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||||||  |||||||||||||||||||||||| ||||| |||||| ||||||    
T  27487681 tttggtgccaatttcggtggactaagtccatacagagct-tgctctagcttta 27487630  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 14946835 - 14946902
Alignment:
Q  8 ttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||||||||||| ||| |||||  |||||| |||| ||||||||||||||||||||||||| ||||||    
T  14946835 ttaggttcgattttctctggtgtcaatttcagtgggctaagtccatacggagctatgctctagcttta 14946902  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 24196062 - 24196156
Alignment:
Q  10 aggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggctttagctcagccccgcaagtgggcggtgtgattg 105  Q
    ||||||||||  || |||||  ||||||||||| |||||||||||| || || |||||||||||||     ||||||||||||||||||| |||||    
T  24196062 aggttcgattccctctggtgcaaatttcggtgggctaagtccatacagaact-tgctctggctttaaacgggccccgcaagtgggcggtgggattg 24196156  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 15038012 - 15038081
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  ||||||||  ||||||||||| |||||||||||| ||||| |||| ||||||||    
T  15038012 gtctcaggttcgattccctttggtgccaatttcggtgggctaagtccatacagagct-tgctttggcttta 15038081  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 17324819 - 17324888
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  17324819 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 17324888  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 27290641 - 27290710
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  ||| ||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  27290641 gtctcaggttcgattcccttcggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 27290710  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 30466974 - 30466905
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| |||||||||| ||| || ||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  30466974 gtctcaggttcgattctctctgctgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 30466905  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 44946197 - 44946128
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  ||||||||  ||||||||||| |||||||||||| || || |||||||||||||    
T  44946197 gtctcaggttcgattccctttggtgccaatttcggtgggctaagtccatacagaact-tgctctggcttta 44946128  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 34516536 - 34516488
Alignment:
Q  26 ggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    ||||||||||||||||| |||||||||||| ||||| |||||| ||||||    
T  34516536 ggtggtaatttcggtgggctaagtccatacagagct-tgctctcgcttta 34516488  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 53787175 - 53787132
Alignment:
Q  32 aatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  53787175 aatttcggtgggctaagtccatgcggagctatgctctggcttta 53787132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 5609346 - 5609277
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| |||||||||| ||| |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  5609346 gtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 5609277  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 33992679 - 33992748
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    ||||||||||||||| ||| |||||  ||||||||||| ||||||||||||  |||| |||||||||||||    
T  33992679 gtcttaggttcgattctctctggtgccaatttcggtgggctaagtccatacatagct-tgctctggcttta 33992748  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 34844902 - 34844833
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| |||||||||| ||| |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  34844902 gtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 34844833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 40058996 - 40058927
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| |||||||||| ||| |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  40058996 gtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 40058927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 32990486 - 32990557
Alignment:
Q  3 aagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||||| ||||||||||  |||| |||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  32990486 aagtctcaggttcgattccctttagtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 32990557  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 13771596 - 13771557
Alignment:
Q  36 tcggtggactaagtccatacggagctatgctctggcttta 75  Q
    ||||||| ||||||||||||| ||||||||||||||||||    
T  13771596 tcggtgggctaagtccatacgaagctatgctctggcttta 13771557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 34835609 - 34835651
Alignment:
Q  32 aatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||    
T  34835609 aatttcggtgggctaagtccatacggagctatg-tctggcttta 34835651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 25852267 - 25852336
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  25852267 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 25852336  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 27528939 - 27528870
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  27528939 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 27528870  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 27746479 - 27746410
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  ||||||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  27746479 gtctcaggttcgattccctttggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 27746410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 21667612 - 21667676
Alignment:
Q  10 aggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    ||||||||||  |||||||| |||||||||||| |||||||||||| ||||| ||||||| |||||    
T  21667612 aggttcgatttcctttggtgctaatttcggtgggctaagtccatacagagct-tgctctgccttta 21667676  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 28964117 - 28964159
Alignment:
Q  32 aatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||    
T  28964117 aatttcggtgggctaagtccatacggagctatg-tctggcttta 28964159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 3734767 - 3734698
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  3734767 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 3734698  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 4718702 - 4718771
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  4718702 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 4718771  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 6953151 - 6953082
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  6953151 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 6953082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 15259550 - 15259481
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  15259550 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 15259481  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 34237799 - 34237730
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  34237799 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 34237730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 39349313 - 39349382
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  39349313 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 39349382  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 11448924 - 11448993
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| |||||||||| ||| |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  11448924 gtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 11448993  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 34147397 - 34147468
Alignment:
Q  3 aagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  34147397 aagtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 34147468  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 34160013 - 34160084
Alignment:
Q  3 aagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  34160013 aagtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 34160084  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 654290 - 654221
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  654290 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 654221  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 12390478 - 12390547
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  12390478 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 12390547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 15360242 - 15360173
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  15360242 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 15360173  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 30257677 - 30257746
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  ||||||||  ||||||| |||||||||||||||| ||||| |||||||||||||    
T  30257677 gtctcaggttcgattccctttggtgccaatttcgatggactaagtccatacagagct-tgctctggcttta 30257746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 18177026 - 18176962
Alignment:
Q  10 aggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    ||||||||||  || |||||  |||||||||||||||||||||||| ||||| |||||||||||||    
T  18177026 aggttcgattccctctggtgccaatttcggtggactaagtccatacagagct-tgctctggcttta 18176962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 53234056 - 53233988
Alignment:
Q  3 aagtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggct 72  Q
    |||||| |||||||||| ||| |||||  ||||||||||| |||||||||||| ||||| ||||||||||    
T  53234056 aagtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggct 53233988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 45272533 - 45272491
Alignment:
Q  32 aatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    ||||||||||| |||||||||||||||||| |||||||||||||    
T  45272533 aatttcggtgggctaagtccatacggagct-tgctctggcttta 45272491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 8456294 - 8456225
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  8456294 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 8456225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 26108345 - 26108414
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  26108345 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 26108414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 30807297 - 30807228
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  30807297 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 30807228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 35492964 - 35493033
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  35492964 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 35493033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 40133593 - 40133524
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  40133593 gtctcaggttcgattccctctggtgtcaatttcggtgggctaagtccatacagagct-tgctctggcttta 40133524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 40940878 - 40940947
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  |||||||||||||||||||||||| ||||| ||||||| |||||    
T  40940878 gtctcaggttcgattccctctggtgccaatttcggtggactaagtccatacagagct-tgctctgacttta 40940947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 49167114 - 49167159
Alignment:
Q  10 aggttcgattatctttggtggtaatttcggtggactaagtccatac 55  Q
    |||||||||| ||| |||||  ||||||||||||||||||||||||    
T  49167114 aggttcgattctctctggtgtcaatttcggtggactaagtccatac 49167159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 8077700 - 8077769
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| |||||||||| ||| |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  8077700 gtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 8077769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 9500499 - 9500430
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| |||||||||| ||| |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  9500499 gtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 9500430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 15059546 - 15059477
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| |||||||||| ||| |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  15059546 gtctcaggttcgattctctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 15059477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 4621381 - 4621312
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  4621381 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 4621312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 7766871 - 7766802
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || ||||| |||||||||||| |||||||||||| ||||| ||||||| |||||    
T  7766871 gtctcaggttcgattccctctggtgctaatttcggtgggctaagtccatacagagct-tgctctgacttta 7766802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 8254896 - 8254827
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| |||||||||||||| |||||  ||||||||||| |||||| ||||| || || |||||||||||||    
T  8254896 gtctcaggttcgattatctctggtgtcaatttcggtgggctaagttcatacagaact-tgctctggcttta 8254827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 24122076 - 24122145
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  24122076 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 24122145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 24674446 - 24674515
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  24674446 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 24674515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 12993954 - 12993998
Alignment:
Q  3 aagtcttaggttcgattatctttggtggtaatttcggtggactaa 47  Q
    |||||| |||||||||||||| ||||| |||||| ||||||||||    
T  12993954 aagtctcaggttcgattatctctggtgctaattttggtggactaa 12993998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 5226 - 5157
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  5226 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 5157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 40378 - 40447
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  40378 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 40447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 654848 - 654779
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  654848 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 654779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 2751328 - 2751397
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  2751328 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 2751397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 7176006 - 7175937
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  7176006 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 7175937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 7275334 - 7275403
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  7275334 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 7275403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 22119945 - 22120014
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  22119945 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 22120014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 40543054 - 40542985
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  40543054 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 40542985  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 21835213 - 21835277
Alignment:
Q  10 aggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttta 75  Q
    ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| |||||||||||||    
T  21835213 aggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttta 21835277  T

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Target: scaffold0019 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 161862 - 161930
Alignment:
Q  5 gtcttaggttcgattatctttggtggtaatttcggtggactaagtccatacggagctatgctctggcttt 74  Q
    |||| ||||||||||  || |||||  ||||||||||| |||||||||||| ||||| ||||||||||||    
T  161862 gtctcaggttcgattccctctggtgccaatttcggtgggctaagtccatacagagct-tgctctggcttt 161930  T

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