View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0781_low_5 (Length: 465)

Name: NF0781_low_5
Description: NF0781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0781_low_5
NF0781_low_5
[»] chr4 (17 HSPs)
chr4 (213-366)||(38147357-38147517)
chr4 (240-360)||(12639723-12639843)
chr4 (248-360)||(28103806-28103918)
chr4 (247-336)||(917683-917772)
chr4 (240-356)||(43012754-43012870)
chr4 (269-356)||(23643431-23643518)
chr4 (269-334)||(12639208-12639273)
chr4 (240-356)||(54714873-54714989)
chr4 (272-334)||(28104360-28104421)
chr4 (272-334)||(919115-919176)
chr4 (240-334)||(43013130-43013224)
chr4 (240-308)||(12629834-12629902)
chr4 (327-358)||(918651-918682)
chr4 (320-362)||(23037996-23038038)
chr4 (247-308)||(25163430-25163491)
chr4 (301-361)||(8497099-8497159)
chr4 (321-361)||(29864749-29864789)
[»] chr2 (9 HSPs)
chr2 (241-360)||(4329599-4329718)
chr2 (240-360)||(39865300-39865420)
chr2 (240-360)||(29770766-29770886)
chr2 (228-356)||(30674429-30674557)
chr2 (241-356)||(9074598-9074713)
chr2 (243-334)||(4330136-4330226)
chr2 (252-356)||(9914204-9914308)
chr2 (272-334)||(29771299-29771360)
chr2 (240-334)||(39864768-39864860)
[»] chr3 (10 HSPs)
chr3 (64-212)||(45395411-45395560)
chr3 (240-360)||(23566891-23567011)
chr3 (242-356)||(39737730-39737844)
chr3 (243-356)||(785770-785883)
chr3 (269-356)||(30385749-30385836)
chr3 (272-334)||(39737232-39737293)
chr3 (270-356)||(53153855-53153941)
chr3 (242-334)||(23566432-23566522)
chr3 (96-162)||(50470355-50470421)
chr3 (261-334)||(53153517-53153590)
[»] scaffold0064 (1 HSPs)
scaffold0064 (64-213)||(19902-20052)
[»] chr6 (7 HSPs)
chr6 (64-212)||(17922842-17922991)
chr6 (242-356)||(8700890-8701004)
chr6 (269-356)||(12307301-12307388)
chr6 (269-356)||(7727381-7727468)
chr6 (247-356)||(604984-605096)
chr6 (240-334)||(12306970-12307064)
chr6 (240-334)||(8701263-8701357)
[»] chr7 (12 HSPs)
chr7 (240-360)||(31166956-31167076)
chr7 (252-358)||(21971546-21971651)
chr7 (261-344)||(27596002-27596084)
chr7 (237-356)||(28750927-28751045)
chr7 (361-450)||(36998070-36998156)
chr7 (241-356)||(38916392-38916507)
chr7 (252-356)||(27230474-27230578)
chr7 (239-354)||(15577468-15577578)
chr7 (241-334)||(21972092-21972184)
chr7 (248-356)||(32741787-32741895)
chr7 (241-334)||(38916045-38916138)
chr7 (301-361)||(21948149-21948209)
[»] chr8 (8 HSPs)
chr8 (244-360)||(26759207-26759323)
chr8 (249-360)||(146644-146755)
chr8 (237-356)||(308301-308420)
chr8 (248-356)||(186682-186790)
chr8 (240-331)||(187049-187140)
chr8 (272-334)||(147190-147251)
chr8 (302-356)||(25277141-25277195)
chr8 (301-361)||(43724158-43724218)
[»] chr5 (7 HSPs)
chr5 (240-360)||(39121836-39121956)
chr5 (84-212)||(3623465-3623594)
chr5 (248-356)||(14393983-14394091)
chr5 (240-355)||(20983543-20983658)
chr5 (248-356)||(25672272-25672380)
chr5 (243-334)||(20983842-20983933)
chr5 (240-334)||(14394344-14394438)
[»] chr1 (2 HSPs)
chr1 (248-356)||(40888792-40888900)
chr1 (240-308)||(23269946-23270014)


Alignment Details
Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 213 - 366
Target Start/End: Original strand, 38147357 - 38147517
Alignment:
Q  213 atttaataatttgggcaatgttaaccag-------gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaatt 305  Q
    |||||||||||||||||||| ||||| |       |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38147357 atttaataatttgggcaatgctaaccggtgctttcgggcactggataaggaacagtaaatagtcaataaataaatggatctcacttaattcatctcaatt 38147456  T
Q  306 aaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaatactctctgatg 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38147457 aaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaatactctttgatg 38147517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 240 - 360
Target Start/End: Complemental strand, 12639843 - 12639723
Alignment:
Q  240 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 339  Q
    |||| ||||||||||||||| ||||||| |||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  12639843 ggggtactggataaggaacaataaataggcaataaataaatggatctcacttaattcacctcaattaaagtgtaaaatatgtcaactaattaaaaataat 12639744  T
Q  340 aaaagctatattcaatactct 360  Q
    |||||||||||||||||||||    
T  12639743 aaaagctatattcaatactct 12639723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 248 - 360
Target Start/End: Original strand, 28103806 - 28103918
Alignment:
Q  248 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 347  Q
    |||||||||||| |||||| ||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28103806 ggataaggaacaataaataatcattaaataaatggatctcacttaattcatctcaattagagtgtaatatatgtcaactaattaaaaataataaaagcta 28103905  T
Q  348 tattcaatactct 360  Q
    |||||||||||||    
T  28103906 tattcaatactct 28103918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 247 - 336
Target Start/End: Original strand, 917683 - 917772
Alignment:
Q  247 tggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaat 336  Q
    ||||||| ||||| ||||||||||||||||||||  |||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  917683 tggataaagaacaataaatagtcaataaataaatgaatctaagttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaat 917772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 240 - 356
Target Start/End: Original strand, 43012754 - 43012870
Alignment:
Q  240 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 339  Q
    |||||||||||||||||||| ||||||| |||||||||||| ||||||| ||  || | || ||||||||||||| |||| |||||||||||||| ||||    
T  43012754 ggggcactggataaggaacaataaatagacaataaataaatggatctcatttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaat 43012853  T
Q  340 aaaagctatattcaata 356  Q
    ||| | |||||||||||    
T  43012854 aaatgttatattcaata 43012870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 269 - 356
Target Start/End: Original strand, 23643431 - 23643518
Alignment:
Q  269 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 356  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||| |||| |||||||||||||| ||||||| |||||||||||||    
T  23643431 caataaataaattgatctcacttcatttatcttaattaaagtgtaaaatatttcaactaattaaaattaataaatgctatattcaata 23643518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 269 - 334
Target Start/End: Original strand, 12639208 - 12639273
Alignment:
Q  269 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 334  Q
    |||||||||||| |||||||||||||| | ||||||||| |||||| |||||||||||||||||||    
T  12639208 caataaataaatggatctcacttaatttacctcaattaatgtgtaaaatatgtcaactaattaaaa 12639273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 54714989 - 54714873
Alignment:
Q  240 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 339  Q
    |||||| ||||||| ||| |  |||||| |||||||||||| ||| |||||| ||| |||| ||||||||||||| |||| | || ||||||||| ||||    
T  54714989 ggggcattggataaagaataaaaaataggcaataaataaatggatttcacttgatttatcttaattaaagtgtaaaatattttaaataattaaaattaat 54714890  T
Q  340 aaaagctatattcaata 356  Q
    ||| | |||||||||||    
T  54714889 aaatgttatattcaata 54714873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 334
Target Start/End: Complemental strand, 28104421 - 28104360
Alignment:
Q  272 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 334  Q
    ||||||||| ||||||||||||||||||||||||||| ||||| |||| ||||||||||||||    
T  28104421 taaataaatggatctcacttaattcatctcaattaaa-tgtaaaatatatcaactaattaaaa 28104360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 272 - 334
Target Start/End: Complemental strand, 919176 - 919115
Alignment:
Q  272 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 334  Q
    |||||||||  |||||||||||||||||||||||||| ||||| |||| ||||||||||||||    
T  919176 taaataaatgaatctcacttaattcatctcaattaaa-tgtaaaatatatcaactaattaaaa 919115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 334
Target Start/End: Complemental strand, 43013224 - 43013130
Alignment:
Q  240 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 334  Q
    ||||||||||||||| || | ||||||| |||||||||||| ||| ||| ||  || | || ||||||||||  ||||| |||||||||||||||    
T  43013224 ggggcactggataagaaataataaataggcaataaataaatggatttcaattggtttacctaaattaaagtgagatataagtcaactaattaaaa 43013130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 308
Target Start/End: Original strand, 12629834 - 12629902
Alignment:
Q  240 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaa 308  Q
    |||||||||||||||||||| ||||||| |||||||| ||| ||||| || | ||| | ||||||||||    
T  12629834 ggggcactggataaggaacattaaatagacaataaatgaatagatcttacatgatttacctcaattaaa 12629902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 358
Target Start/End: Original strand, 918651 - 918682
Alignment:
Q  327 aattaaaaataataaaagctatattcaatact 358  Q
    ||||||||||||||||||||||||||||||||    
T  918651 aattaaaaataataaaagctatattcaatact 918682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 362
Target Start/End: Complemental strand, 23038038 - 23037996
Alignment:
Q  320 gtcaactaattaaaaataataaaagctatattcaatactctct 362  Q
    ||||||||||||||| ||||||||| | |||||||||||||||    
T  23038038 gtcaactaattaaaattaataaaagttgtattcaatactctct 23037996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 308
Target Start/End: Original strand, 25163430 - 25163491
Alignment:
Q  247 tggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaa 308  Q
    ||||||||||||| ||||||| |||||||| ||| ||||| |||| ||| | ||||||||||    
T  25163430 tggataaggaacattaaatagacaataaatgaatagatcttactttatttacctcaattaaa 25163491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 361
Target Start/End: Original strand, 8497099 - 8497159
Alignment:
Q  301 caattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaatactctc 361  Q
    |||||||| ||||| ||| ||||||||||||| | ||||||||  | ||||||||||||||    
T  8497099 caattaaaatgtaaaataggtcaactaattaagattaataaaaattctattcaatactctc 8497159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 361
Target Start/End: Original strand, 29864749 - 29864789
Alignment:
Q  321 tcaactaattaaaaataataaaagctatattcaatactctc 361  Q
    |||||||||||| | |||||||| |||||||||||||||||    
T  29864749 tcaactaattaagattaataaaaactatattcaatactctc 29864789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 241 - 360
Target Start/End: Original strand, 4329599 - 4329718
Alignment:
Q  241 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataata 340  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4329599 gggcactggataaggaacagtaaatagttaataaataaatagatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataata 4329698  T
Q  341 aaagctatattcaatactct 360  Q
    ||||||||||||||||||||    
T  4329699 aaagctatattcaatactct 4329718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 240 - 360
Target Start/End: Complemental strand, 39865420 - 39865300
Alignment:
Q  240 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 339  Q
    |||||||||||||||||||| |||||||| | |||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39865420 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcaattaaagtataatatatgtcaactaattaaaaataat 39865321  T
Q  340 aaaagctatattcaatactct 360  Q
    |||||||||||||||||||||    
T  39865320 aaaagctatattcaatactct 39865300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 240 - 360
Target Start/End: Original strand, 29770766 - 29770886
Alignment:
Q  240 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 339  Q
    |||||||||||||||||||| |||||||| | |||||||||  |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  29770766 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcagttaaagtataatatatgtcaactaattaaaaataat 29770865  T
Q  340 aaaagctatattcaatactct 360  Q
    |||||||||| ||||||||||    
T  29770866 aaaagctataatcaatactct 29770886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 356
Target Start/End: Complemental strand, 30674557 - 30674429
Alignment:
Q  228 caatgttaaccaggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaacta 327  Q
    ||||| ||||| ||||||| |||||| ||||| | ||||  |||||||||||| |||||||||| ||| |||| ||||||| ||||| |||| |||||||    
T  30674557 caatgctaaccgggggcaccggataaagaacaattaataagcaataaataaatagatctcacttgatttatcttaattaaaatgtaaaatatttcaacta 30674458  T
Q  328 attaaaaataataaaagctatattcaata 356  Q
    ||||||| ||||||| | |||||||||||    
T  30674457 attaaaattaataaatgttatattcaata 30674429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 241 - 356
Target Start/End: Original strand, 9074598 - 9074713
Alignment:
Q  241 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataata 340  Q
    |||||| |||||| ||||| ||||||| |||||||||||| ||||||||||  || | || ||||||||||||| |||| |||||||||||||| |||||    
T  9074598 gggcaccggataaagaacaataaatagacaataaataaatggatctcacttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaata 9074697  T
Q  341 aaagctatattcaata 356  Q
    || | |||||||||||    
T  9074698 aatgttatattcaata 9074713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 334
Target Start/End: Complemental strand, 4330226 - 4330136
Alignment:
Q  243 gcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 334  Q
    ||||||||||||||||| | ||||  || ||||||||| ||||||||||||||||||||||||||| ||||| |||||| ||||||||||||    
T  4330226 gcactggataaggaacaattaatatgcattaaataaatggatctcacttaattcatctcaattaaa-tgtaaaatatgttaactaattaaaa 4330136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 252 - 356
Target Start/End: Original strand, 9914204 - 9914308
Alignment:
Q  252 aaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatatt 351  Q
    |||||||| |||||||  |||||||||||  ||||||||| ||| |  | ||||||||||||| |||| |||||||| ||||| ||||||| ||||||||    
T  9914204 aaggaacaataaataggtaataaataaatgaatctcacttgatttactttaattaaagtgtaaaatatttcaactaactaaaattaataaatgctatatt 9914303  T
Q  352 caata 356  Q
    |||||    
T  9914304 caata 9914308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 272 - 334
Target Start/End: Complemental strand, 29771360 - 29771299
Alignment:
Q  272 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 334  Q
    |||||||||  |||||||||||||||||||||||| | ||||| |||||||||||||||||||    
T  29771360 taaataaatgaatctcacttaattcatctcaattata-tgtaaaatatgtcaactaattaaaa 29771299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 334
Target Start/End: Original strand, 39864768 - 39864860
Alignment:
Q  240 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 334  Q
    ||||||||||||||||| || | ||||  || |||||||||  |||||| |||||||||||||| |||| |||||  |||||||| |||||||||    
T  39864768 ggggcactggataagga-caattaatatgcattaaataaatgaatctcatttaattcatctcaaataaa-tgtaaactatgtcaattaattaaaa 39864860  T

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Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 64 - 212
Target Start/End: Original strand, 45395411 - 45395560
Alignment:
Q  64 aacgagcagaacctgtggacatcaagcggtggaa-ggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatag 162  Q
    ||||||| |||  ||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||| |||||||||| ||||||     
T  45395411 aacgagcggaatttgtggacatcaagcggtggaaaggaaaacatgggatgagagaatataattagttaatggaaagaaaaatatccaaggatggtaataa 45395510  T
Q  163 catcgtgggtttctcgtgcatggtttatgtcgtgtaataaagcattttcc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45395511 catcgtgggtttctcgtgcatggtttatgtcgtgtaataaagcattttcc 45395560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 240 - 360
Target Start/End: Complemental strand, 23567011 - 23566891
Alignment:
Q  240 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 339  Q
    |||||||||||||||||||| |||||||| | |||||||||  || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23567011 ggggcactggataaggaacaataaatagtaattaaataaatgaatatcacttaattcatctcaattaaagtataatatatgtcaactaattaaaaataat 23566912  T
Q  340 aaaagctatattcaatactct 360  Q
    |||||||||||||||||||||    
T  23566911 aaaagctatattcaatactct 23566891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 242 - 356
Target Start/End: Complemental strand, 39737844 - 39737730
Alignment:
Q  242 ggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataa 341  Q
    |||||||||||||||||| |||||||| | ||||||||| ||||| | ||||||||||||||||||| | |||||||||| |||||||||||||||||||    
T  39737844 ggcactggataaggaacaataaatagtaattaaataaatagatcttatttaattcatctcaattaaaatataatatatgttaactaattaaaaataataa 39737745  T
Q  342 aagctatattcaata 356  Q
    |||||||||||||||    
T  39737744 aagctatattcaata 39737730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 243 - 356
Target Start/End: Complemental strand, 785883 - 785770
Alignment:
Q  243 gcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaa 342  Q
    |||||| |||||||||| ||||||| |||||||||||| |||||||||| ||| | || ||| ||||||||| ||||  ||| ||||||||| ||||||     
T  785883 gcactgaataaggaacattaaataggcaataaataaatggatctcacttgatttaccttaatcaaagtgtaaaatattgcaattaattaaaattaataat 785784  T
Q  343 agctatattcaata 356  Q
     |||||||||||||    
T  785783 tgctatattcaata 785770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 269 - 356
Target Start/End: Complemental strand, 30385836 - 30385749
Alignment:
Q  269 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 356  Q
    |||||||||||| ||||||| || ||| | || ||||||||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  30385836 caataaataaatggatctcatttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgatatattcaata 30385749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 272 - 334
Target Start/End: Original strand, 39737232 - 39737293
Alignment:
Q  272 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 334  Q
    |||||||||  |||||||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  39737232 taaataaatgaatctcacttaatccatctcaattaaa-tgtaaaatatgtcaactaattaaaa 39737293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 270 - 356
Target Start/End: Complemental strand, 53153941 - 53153855
Alignment:
Q  270 aataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 356  Q
    |||||||| ||  ||||||||| ||| | || ||||||||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  53153941 aataaatagatgaatctcacttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgttatattcaata 53153855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 334
Target Start/End: Original strand, 23566432 - 23566522
Alignment:
Q  242 ggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 334  Q
    ||||||||||||| |||| | ||||  || |||||||||  |||| |||||||||||||||| |||| |||||  ||||||||||||||||||    
T  23566432 ggcactggataag-aacaattaatatgcattaaataaataaatcttacttaattcatctcaaataaa-tgtaaactatgtcaactaattaaaa 23566522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 50470355 - 50470421
Alignment:
Q  96 aaggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatag 162  Q
    ||||||||||||||| ||||||||  ||||| |||| ||||| | |||||||||| ||| |||||||    
T  50470355 aaggaaaacatggggagagagaattcaattagttaacggaaatataaacatccaaagatggtaatag 50470421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 334
Target Start/End: Original strand, 53153517 - 53153590
Alignment:
Q  261 taaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 334  Q
    ||||||| |||||||||||| ||| ||| ||  || |||| ||||||||||  ||||| |||||||||||||||    
T  53153517 taaataggcaataaataaatggatttcaattggtttatctaaattaaagtgagatataagtcaactaattaaaa 53153590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 64 - 213
Target Start/End: Original strand, 19902 - 20052
Alignment:
Q  64 aacgagcagaacctgtggacatcaagcggtggaa-ggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatag 162  Q
    ||||||| |||  ||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||  |||||     
T  19902 aacgagcggaatttgtggacatcaagcggtggaaaggaaaacatgggatgagagaatataatcaattaatggaaagaaaaacatccaaggatgataataa 20001  T
Q  163 catcgtgggtttctcgtgcatggtttatgtcgtgtaataaagcattttcca 213  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20002 catcgtggctttctcgtgcatggtttatgtcgtgtaataaagcattttcca 20052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 3e-49; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 64 - 212
Target Start/End: Original strand, 17922842 - 17922991
Alignment:
Q  64 aacgagcagaacctgtggacatcaagcggtggaagg--aaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaata 161  Q
    ||||||| |||  ||||||||||||||||||||| |  |||||||||| ||||||||||||||||  |||||||||||||||||||||||| | ||||||    
T  17922842 aacgagcggaatttgtggacatcaagcggtggaaaggaaaaacatggg-tgagagaatataattagctaatggaaagaaaaacatccaagggtggtaata 17922940  T
Q  162 gcatcgtgggtttctcgtgcatggtttatgtcgtgtaataaagcattttcc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17922941 gcatcgtgggtttctcgtgcatggtttatgtcgtgtaataaagcattttcc 17922991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 356
Target Start/End: Original strand, 8700890 - 8701004
Alignment:
Q  242 ggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataa 341  Q
    ||||| |||||||||||| ||||||| ||||||||| || |||||||||| ||| | || ||||||||||||| |||| | |||||||||||| ||||||    
T  8700890 ggcaccggataaggaacaataaataggcaataaatagatggatctcacttgatttaccttaattaaagtgtaaaatattttaactaattaaaattaataa 8700989  T
Q  342 aagctatattcaata 356  Q
    | | |||||||||||    
T  8700990 atgttatattcaata 8701004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 269 - 356
Target Start/End: Complemental strand, 12307388 - 12307301
Alignment:
Q  269 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 356  Q
    |||||||||||| |||||||||| ||| |||| ||||||||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  12307388 caataaataaatagatctcacttgatttatcttaattaaagtgtaaaatatttcaactaattaaaattaataaatgttatattcaata 12307301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 269 - 356
Target Start/End: Complemental strand, 7727468 - 7727381
Alignment:
Q  269 caataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 356  Q
    |||||||||||||||||||||||  || | || ||||||||||||| |||| |||||||||||||| ||||||| | |||||||||||    
T  7727468 caataaataaattgatctcacttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgttatattcaata 7727381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 356
Target Start/End: Original strand, 604984 - 605096
Alignment:
Q  247 tggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaac---taattaaaaataataaaa 343  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||| ||| | || ||||||||| ||| |||| |||||   ||||||||| |||||||     
T  604984 tggataaggaacaataaataggcaataaataaatggatctcacttgatttaccttaattaaagtataaaatatttcaactaataattaaaattaataaat 605083  T
Q  344 gctatattcaata 356  Q
    | |||||||||||    
T  605084 gttatattcaata 605096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 334
Target Start/End: Original strand, 12306970 - 12307064
Alignment:
Q  240 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 334  Q
    ||||||||||||||| || | ||||||| ||||||||||||  |||| | || ||| | || ||||||||||  ||||| |||||||||||||||    
T  12306970 ggggcactggataagaaataataaatagacaataaataaatgaatcttaattgatttacctaaattaaagtgagatataagtcaactaattaaaa 12307064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 334
Target Start/End: Complemental strand, 8701357 - 8701263
Alignment:
Q  240 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 334  Q
    |||||||||| |||| || | ||||||| ||||||||||||  |||||| || ||| |  | ||||||||||  ||||| |||||||||||||||    
T  8701357 ggggcactggttaagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgatatataagtcaactaattaaaa 8701263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 240 - 360
Target Start/End: Complemental strand, 31167076 - 31166956
Alignment:
Q  240 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 339  Q
    |||||||||||||||||||| |||||||| | |||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31167076 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaattcatctcaattaaagtataatatatgtcaactaattaaaaataat 31166977  T
Q  340 aaaagctatattcaatactct 360  Q
    |||||||||||||||||||||    
T  31166976 aaaagctatattcaatactct 31166956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 252 - 358
Target Start/End: Original strand, 21971546 - 21971651
Alignment:
Q  252 aaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatatt 351  Q
    |||||||| |||||| | | ||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21971546 aaggaacaataaataataattaaataaat-gatctcacttaactcatctcaattaaagtataatatatgtcaactaattaaaaataataaaagctatatt 21971644  T
Q  352 caatact 358  Q
    |||||||    
T  21971645 caatact 21971651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 261 - 344
Target Start/End: Original strand, 27596002 - 27596084
Alignment:
Q  261 taaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaag 344  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27596002 taaatagccaataaataaatggatctcacttaattcatctcaattaaagtgtaatata-gtcaactaattaaaaataataaaag 27596084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 237 - 356
Target Start/End: Complemental strand, 28751045 - 28750927
Alignment:
Q  237 ccaggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaat 336  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| || | || ||||||||||||| |||| |||||||||||||| |    
T  28751045 ccaggggcactggataaggaacaataaataggcaataaataaatggatctcacttagtttaccttaattaaagtgtaaaatatttcaactaattaaaatt 28750946  T
Q  337 aataaaagctatattcaata 356  Q
    |||||| | |||||||||||    
T  28750945 aataaatg-tatattcaata 28750927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 361 - 450
Target Start/End: Complemental strand, 36998156 - 36998070
Alignment:
Q  361 ctgatgaggtttgccttagcagcttttcacattaagtccttcaaagccttacctgaaaacagccatatgttaatgttagattttacaacc 450  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||   || |||||||||||||||||    
T  36998156 ctgatgaggtttgccttagcagctttccacattaaatccttcaaagccttacctgaaaacagccata---tattgttagattttacaacc 36998070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 241 - 356
Target Start/End: Complemental strand, 38916507 - 38916392
Alignment:
Q  241 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataata 340  Q
    ||||||||||||| ||||| ||||||| |||||||||||| |||||||||| ||| | || ||||||||||||| |||| |||||||||||||| |||||    
T  38916507 gggcactggataaagaacaataaatagacaataaataaatggatctcacttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaata 38916408  T
Q  341 aaagctatattcaata 356  Q
    || | |||||| ||||    
T  38916407 aatgttatatttaata 38916392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 252 - 356
Target Start/End: Original strand, 27230474 - 27230578
Alignment:
Q  252 aaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctatatt 351  Q
    |||||||| | ||||| ||||||||||||  |||||| || ||| | || ||||||||||||| |||| |||||||||||||| ||||||| ||||||||    
T  27230474 aaggaacaattaatagacaataaataaatgaatctcatttgatttaccttaattaaagtgtaaaatatttcaactaattaaaattaataaatgctatatt 27230573  T
Q  352 caata 356  Q
    |||||    
T  27230574 caata 27230578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 239 - 354
Target Start/End: Original strand, 15577468 - 15577578
Alignment:
Q  239 aggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataa 338  Q
    ||||||||||||||||||||| ||||||| |||     |||| ||||||||||| || | || ||||||||||||| |||| |||||||||||||| |||    
T  15577468 aggggcactggataaggaacaataaatagacaa-----aaatggatctcacttagtttaccttaattaaagtgtaaaatatttcaactaattaaaattaa 15577562  T
Q  339 taaaagctatattcaa 354  Q
    |||| | |||||||||    
T  15577563 taaatgatatattcaa 15577578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 21972184 - 21972092
Alignment:
Q  241 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 334  Q
    ||||||||||||||||||| | || |  || |||||||||  |||||||||||||||||| ||||||| ||||| |||||||||||||||||||    
T  21972184 gggcactggataaggaacaattaaaatgcattaaataaatgaatctcacttaattcatcttaattaaa-tgtaaaatatgtcaactaattaaaa 21972092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 248 - 356
Target Start/End: Complemental strand, 32741895 - 32741787
Alignment:
Q  248 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 347  Q
    |||||| ||||| ||||||  |||||||||||| ||||||||||  || | || ||||||||| ||| |||| ||||||| |||||| ||||||| ||||    
T  32741895 ggataatgaacaataaataagcaataaataaatggatctcacttggtttaccttaattaaagtataaaatatttcaactatttaaaattaataaatgcta 32741796  T
Q  348 tattcaata 356  Q
    |||||||||    
T  32741795 tattcaata 32741787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 334
Target Start/End: Original strand, 38916045 - 38916138
Alignment:
Q  241 gggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 334  Q
    |||||||||||||| || | ||||||| |||||||||||| ||||||| ||  || |||| ||||||||||  ||||| |||||||||||||||    
T  38916045 gggcactggataagaaataataaataggcaataaataaatagatctcaattggtttatctaaattaaagtgagatataagtcaactaattaaaa 38916138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 361
Target Start/End: Original strand, 21948149 - 21948209
Alignment:
Q  301 caattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaatactctc 361  Q
    |||| ||| ||||| ||| ||||||||||||||| |||||||| || ||||||||||||||    
T  21948149 caatcaaaatgtaaaataagtcaactaattaaaattaataaaaactctattcaatactctc 21948209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 244 - 360
Target Start/End: Original strand, 26759207 - 26759323
Alignment:
Q  244 cactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaa 343  Q
    |||||||||||||||| |||||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  26759207 cactggataaggaacaataaatagtaattaaataaatggatctcacttaattcatctcaattaaagtataatatatgccaactaattaaaaataataaaa 26759306  T
Q  344 gctatattcaatactct 360  Q
    |||||||| ||||||||    
T  26759307 gctatattaaatactct 26759323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 249 - 360
Target Start/End: Original strand, 146644 - 146755
Alignment:
Q  249 gataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagctat 348  Q
    ||||| ||||| ||||||| || ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  146644 gataatgaacaataaatagccattaaataaatggatctcactttattaatctcaattaaagtgtaatatatgtcaactaattaaaattaataaaaactat 146743  T
Q  349 attcaatactct 360  Q
    ||||||||||||    
T  146744 attcaatactct 146755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 237 - 356
Target Start/End: Original strand, 308301 - 308420
Alignment:
Q  237 ccaggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaat 336  Q
    |||||||||| |||||| ||||| ||||||| |||||||||||| ||||||||||| || | || ||||||||||||| |||| |||||||||||||| |    
T  308301 ccaggggcaccggataatgaacaataaataggcaataaataaatggatctcacttagtttaccttaattaaagtgtaaaatatttcaactaattaaaatt 308400  T
Q  337 aataaaagctatattcaata 356  Q
    |||||| | |||||||||||    
T  308401 aataaatgttatattcaata 308420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 248 - 356
Target Start/End: Original strand, 186682 - 186790
Alignment:
Q  248 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 347  Q
    |||||||||||| |||||||  ||||||||||| |||||||||| ||| |||| ||||||| ||||| |||| |||||||||||||| ||||||| | ||    
T  186682 ggataaggaacaataaatagctaataaataaatggatctcacttgatttatcttaattaaattgtaaaatatttcaactaattaaaattaataaatgtta 186781  T
Q  348 tattcaata 356  Q
    |||||||||    
T  186782 tattcaata 186790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 331
Target Start/End: Complemental strand, 187140 - 187049
Alignment:
Q  240 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaatta 331  Q
    ||||||||||||||| || | ||||||| ||||||||||||  |||||| ||| || | || ||||||||||  ||||| ||||||||||||    
T  187140 ggggcactggataagaaataataaataggcaataaataaatgaatctcaattagtttacctaaattaaagtgagatataagtcaactaatta 187049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 334
Target Start/End: Complemental strand, 147251 - 147190
Alignment:
Q  272 taaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 334  Q
    |||||| || ||||||||||||||||||| ||||||| | ||| |||||||||||||||||||    
T  147251 taaatatatggatctcacttaattcatcttaattaaa-tataaaatatgtcaactaattaaaa 147190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 356
Target Start/End: Complemental strand, 25277195 - 25277141
Alignment:
Q  302 aattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaata 356  Q
    ||||||||||| | |||| | |||||||||||| ||||||| |||||||||||||    
T  25277195 aattaaagtgtgaaatattttaactaattaaaattaataaatgctatattcaata 25277141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 361
Target Start/End: Complemental strand, 43724218 - 43724158
Alignment:
Q  301 caattaaagtgtaatatatgtcaactaattaaaaataataaaagctatattcaatactctc 361  Q
    |||| ||| ||||| ||| ||||||||||||| | |||||||| || ||||||||||||||    
T  43724218 caatcaaaatgtaaaataagtcaactaattaagattaataaaaactctattcaatactctc 43724158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 240 - 360
Target Start/End: Complemental strand, 39121956 - 39121836
Alignment:
Q  240 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 339  Q
    |||||||||||||||||||| |||||||| | |||||||||  ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  39121956 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaatttatctcaattaaagtataatatatgtcaactaattaaaaataat 39121857  T
Q  340 aaaagctatattcaatactct 360  Q
    ||||| |||||||||||||||    
T  39121856 aaaagttatattcaatactct 39121836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 84 - 212
Target Start/End: Original strand, 3623465 - 3623594
Alignment:
Q  84 atcaagcggtggaa-ggaaaacatggggtgagagaatataattaattaatggaaagaaaaacatccaaggattgtaatagcatcgtgggtttctcgtgca 182  Q
    |||||||| ||||| |||||| |||||||||||||||||||||| |||||||||| |||||||||||||| | |||||||| | ||||| ||||||||||    
T  3623465 atcaagcgatggaaaggaaaatatggggtgagagaatataattagttaatggaaataaaaacatccaagggtggtaatagctttgtgggcttctcgtgca 3623564  T
Q  183 tggtttatgtcgtgtaataaagcattttcc 212  Q
    |||||| | ||||  |||||||||||||||    
T  3623565 tggtttctatcgtcaaataaagcattttcc 3623594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 248 - 356
Target Start/End: Original strand, 14393983 - 14394091
Alignment:
Q  248 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 347  Q
    |||||||||||| ||||||  |||||||||||| |||||||||| ||| |||| ||||||| ||||| |||| |||||||||||||  ||||||| ||||    
T  14393983 ggataaggaacaataaataagcaataaataaatggatctcacttgatttatcttaattaaaatgtaaaatatttcaactaattaaatttaataaatgcta 14394082  T
Q  348 tattcaata 356  Q
    |||||||||    
T  14394083 tattcaata 14394091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 355
Target Start/End: Original strand, 20983543 - 20983658
Alignment:
Q  240 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataat 339  Q
    ||||||||||||||| || | ||||||| |||||||||||| ||||||| ||  || | || ||||||||||||| |||| |||||||||||||| ||||    
T  20983543 ggggcactggataagaaaaaataaatagacaataaataaatggatctcatttggtttaccttaattaaagtgtaaaatatttcaactaattaaaattaat 20983642  T
Q  340 aaaagctatattcaat 355  Q
    ||| | ||||||||||    
T  20983643 aaatgttatattcaat 20983658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 248 - 356
Target Start/End: Original strand, 25672272 - 25672380
Alignment:
Q  248 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 347  Q
    |||||||||||| | ||||  |||||||||||| ||||||||||  || || | ||||||||||||| |||| |||||||||||||| ||||||| ||||    
T  25672272 ggataaggaacaatgaatatgcaataaataaatggatctcacttggtttatattaattaaagtgtaaaatatttcaactaattaaaattaataaatgcta 25672371  T
Q  348 tattcaata 356  Q
    |||| ||||    
T  25672372 tatttaata 25672380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 334
Target Start/End: Complemental strand, 20983933 - 20983842
Alignment:
Q  243 gcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 334  Q
    |||||||||||| || | ||||||| |||||||||||| ||| ||| ||  || | || ||||||||||  ||||| |||||||||||||||    
T  20983933 gcactggataagaaataataaataggcaataaataaatggatttcaattggtttacctaaattaaagtgagatataagtcaactaattaaaa 20983842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 334
Target Start/End: Complemental strand, 14394438 - 14394344
Alignment:
Q  240 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 334  Q
    ||||||||| ||||| || | ||||||| ||||||||||||  |||||| ||  || | || ||||||||||  ||||| |||||||||||||||    
T  14394438 ggggcactgaataagaaataataaatagacaataaataaatgaatctcaattggtttacctaaattaaagtgagatataagtcaactaattaaaa 14394344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 248 - 356
Target Start/End: Original strand, 40888792 - 40888900
Alignment:
Q  248 ggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaaataataaaagcta 347  Q
    ||||||| |||| | ||||| ||||| |||||| ||||| |||| ||| |||| ||||||||||||| |||| |||||||||||||| ||||||| ||||    
T  40888792 ggataagaaacaattaataggcaatacataaatggatctaacttgatttatcttaattaaagtgtaaaatatttcaactaattaaaattaataaatgcta 40888891  T
Q  348 tattcaata 356  Q
    |||||||||    
T  40888892 tattcaata 40888900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 308
Target Start/End: Original strand, 23269946 - 23270014
Alignment:
Q  240 ggggcactggataaggaacagtaaatagtcaataaataaattgatctcacttaattcatctcaattaaa 308  Q
    |||||||||||||||||||| ||||||| |||||||| ||| ||||| |||| ||| | ||||||||||    
T  23269946 ggggcactggataaggaacattaaatagacaataaatgaatagatcttacttgatttacctcaattaaa 23270014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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