View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0781_low_6 (Length: 463)
Name: NF0781_low_6
Description: NF0781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0781_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 33 - 382
Target Start/End: Complemental strand, 8039613 - 8039256
Alignment:
| Q |
33 |
tgttcattttctctttacttgcatcatattaaggcttttgatgaaaataattgtgatgctcatatgcagggtgaagtgcaccattgatatatggaagtgc |
132 |
Q |
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| T |
8039613 |
tgttcattttctctttacttgcatcatattaacgcttttgatgaaaataattgtgatgctcata----gggtgaagtgcaccattgatatatggaagtgc |
8039518 |
T |
|
| Q |
133 |
tacttggacatggaatatttaatgttgatggaggagagctttagaagaa-cacagaaaaactactaggttaaaatttgcatcaagaaatttgagagattg |
231 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8039517 |
tacttggacatggaatatttaatgttgatggaggagacctttagaagaaacacagaaaaactactaggttaaaatttgcatcaagaaatttgagagattg |
8039418 |
T |
|
| Q |
232 |
gagcac-aaagttttcaagagaa---tatgttttagaactctcggttattctcaatcaagcatcttttctcaaccaacagatagagaagcaacaatttcg |
327 |
Q |
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| T |
8039417 |
gagcaccaaagttttcaagagaagaatatgttttagaactctcagttattctcaatcaagcatcttttctcaaccaacaaatagagaagcaacaatttcg |
8039318 |
T |
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| Q |
328 |
atgaactagtttaggtttttta-------aaaaatagacatgcaagtaataaaaatacaacc |
382 |
Q |
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| T |
8039317 |
atgaactagtttaggttcttaaaaaaaataaaaatagacatgcaagtaataaaaatacaacc |
8039256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 33 - 381
Target Start/End: Complemental strand, 8027499 - 8027162
Alignment:
| Q |
33 |
tgttcattttctctttacttgcatcatattaaggcttttgatgaaaataattgtgatgctcatatgcagggtgaagtgcaccattgatatatggaagtgc |
132 |
Q |
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| T |
8027499 |
tgttcattttctctttacttgcatcatattaacgcttttgatgaaaataattgtgattctca-atgcagggtaaagtgtaccattgatatatggaagtgc |
8027401 |
T |
|
| Q |
133 |
tacttggacatggaatatttaatgttgatggaggagagctttagaaga-acacagaaaaactactaggttaaaatttgcatcaagaaatttgagagattg |
231 |
Q |
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| T |
8027400 |
tacttggacatggaatatgtaatgttgatggaggggagctttagaagagacacagaaaaactactaggt-----------------aatttgagagattg |
8027318 |
T |
|
| Q |
232 |
gagca-caaagttttcaagagaatatgttttagaactctcggttattctcaatcaagcatcttttctcaaccaacagatagagaagcaacaatttcgatg |
330 |
Q |
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|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
8027317 |
aagcaccaaagttttca--agaatatgttttagaactcttagttattctcaatcaagcatcttttctcaaccaacaaatagacgagcaacaatttcgatg |
8027220 |
T |
|
| Q |
331 |
aactagtttaggttttttaaaaa-------atagacatgcaagtaataaaaatacaac |
381 |
Q |
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| T |
8027219 |
gattaatttaggttcttaaaaaaaaaaaatatagatatgcaagtaataaaaatacaac |
8027162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 46 - 312
Target Start/End: Original strand, 7235546 - 7235809
Alignment:
| Q |
46 |
tttacttgcatcatattaaggcttttgatgaaaataattgtgatgctcatatgcagggtgaagtgcaccattgatatatggaagtgctacttggacatgg |
145 |
Q |
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| T |
7235546 |
tttacttgcattatattaattcttttgatgaaaatacatttgattatga-atgcagggtgaagtgttccattcatatatggaagttctactaggacatgg |
7235644 |
T |
|
| Q |
146 |
aatatttaatgttgatggaggagagctttagaaga-acacagaaaaactactaggttaaaatttgcatcaagaaatttgagagattggagca-caaagtt |
243 |
Q |
| |
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||||||||||||||| |||||||||| ||||| ||| || |||||| | || ||| |||||||||||||||||||||| |||| |||| ||||||| |
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| T |
7235645 |
gatatttaatgttgat---ggagagctttggaagagacaaaggaaaactgcgagcttagaatttgcatcaagaaatttgagggattttagcaccaaagtt |
7235741 |
T |
|
| Q |
244 |
ttcaagagaatatgttttagaactctcggttattctcaatcaagcatcttttctcaaccaacagataga |
312 |
Q |
| |
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||||| |||||||| |||| ||||||| ||| | | |||| ||||||||||||||||||| ||||| |
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| T |
7235742 |
ttcaa-agaatatgctttaaaactctcaaccattttaagtcaatcatcttttctcaaccaacaaataga |
7235809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 67 - 312
Target Start/End: Complemental strand, 49592478 - 49592236
Alignment:
| Q |
67 |
cttttgatgaaaataattgtgatgctcatatgcagggtgaagtgcaccattgatatatggaagtgctacttggacatggaatatttaatgttgatggagg |
166 |
Q |
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||||||||| ||||| ||||||| | | ||||||||||||||| | |||| ||||||||| || ||||| |||||||||||||||||||||||| || |
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| T |
49592478 |
cttttgatggaaatacttgtgattatga-atgcagggtgaagtgtatcattcatatatggaggttctactaggacatggaatatttaatgttgat---gg |
49592383 |
T |
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| Q |
167 |
agagctttagaaga-acacagaaaaactactaggttaaaatttgcatcaagaaatttgagagattggagca-caaagttttcaagagaatatgttttaga |
264 |
Q |
| |
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|||||||| ||||| ||| || |||||| | || ||| |||||||||||||||||||||| |||| |||| |||||||||||| |||||||| |||| | |
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| T |
49592382 |
agagctttggaagagacagaggaaaactgcgagcttagaatttgcatcaagaaatttgagggattttagcaccaaagttttcaa-agaatatgctttaaa |
49592284 |
T |
|
| Q |
265 |
actctcggttattctcaatcaagcatcttttctcaaccaacagataga |
312 |
Q |
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|||||| ||||| | |||| ||||||||||||||||||| ||||| |
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| T |
49592283 |
actctctaccattctaagtcaatcatcttttctcaaccaacaaataga |
49592236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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