View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0781_low_9 (Length: 407)
Name: NF0781_low_9
Description: NF0781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0781_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 34023784 - 34023396
Alignment:
| Q |
1 |
ctctaattcagctgggggaacctgnnnnnnngcaaggaaatgtaaatttatagcaaatgatatcttcaaaaatatatgtccacttcacaatgcatcacct |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34023784 |
ctctaattcagctgggggaacctgaaaaaaagcaaggaaatgtaaatatatagcaaatgatatcttcaaaaatatatgtccacttcacaatgcatcacct |
34023685 |
T |
|
| Q |
101 |
gataagctttgtatttgatcaattccttcagtctatccacaatgaacagataaccatctgagtcaaaataacaaagatctccggtcttcagccatccctc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34023684 |
gataagctttgtatttgatcaattccttcagtctatctacaatgaacagataaccatctgagtcaaaataacaaagatctccagtcttcagccatccctc |
34023585 |
T |
|
| Q |
201 |
tgaatccaacgtctcaacagttgccttgtcatctcctacataacctgcactggcaccataataaacagacacaattatatatctcaagctatatgaacta |
300 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34023584 |
tgaatccaacgtctcaacagtcgccttgtcatctcctacataacctgcactggcaccataataaacagacacaattatatatctcaagctatatgaacta |
34023485 |
T |
|
| Q |
301 |
catttggtcaaaaacatcactc-------aaattgtatatacagcttaacnnnnnnnttggtatatcttgttagcaatcatatgtaata |
382 |
Q |
| |
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|||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
34023484 |
catttggtcaaaaacatcactcaacttggaagttgtatatacagcttaacaaaaaaattggtatatcttgttagcaatcgtatgtaata |
34023396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 34031025 - 34030648
Alignment:
| Q |
1 |
ctctaattcagctgggggaacctgnnnnnnngcaaggaaatgtaaattta-----tagcaaatgatatcttcaaaaatatatgtccacttcacaatgcat |
95 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| || ||||||||| ||||||||||||||| ||||||||||||||||||| |
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|
| T |
34031025 |
ctctaattcagctgggggaacctgaaaaatagcaaggaaatgtaaagataggcgatagcaaatggtatcttcaaaaatatctgtccacttcacaatgcat |
34030926 |
T |
|
| Q |
96 |
cacctgataagctttgtatttgatcaattccttcagtctatccacaatgaacagataaccatctgagtcaaaataacaaagatctccggtcttcagccat |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34030925 |
cacctgataagctttgtatttgatcaattccttcagtctatctacaatgaacagataaccatctgagtcaaaataacaaagatctccggtcttcagccat |
34030826 |
T |
|
| Q |
196 |
ccctctgaatccaacgtctcaacagttgccttgtcatctcctacataacctgcactggcaccataataaacagacacaattatatatctcaagctatatg |
295 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
34030825 |
ccctctgaatccaatgtctcaacagtcgccttgtcatctcctacataacctgcactggcaccataataaacagaaacaattagatatctcaagctat--- |
34030729 |
T |
|
| Q |
296 |
aactacatttggtcaaaaacatcactcaaattgtatatacagcttaacnnnnnnnttggtatatcttgttagcaatcatatgtaata |
382 |
Q |
| |
|
|||||||||||||||||||| || |||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
34030728 |
------atttggtcaaaaacatcacttaacttgtatgtacagcttaacaaaaaaattggtatatcttgttagcaatcatatgtaata |
34030648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 34016795 - 34016928
Alignment:
| Q |
1 |
ctctaattcagctgggggaacctgnnnnnnngcaaggaaatgtaaatttatagcaaatgatatcttcaaaaatatatgtccacttcacaatgcatcacct |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||| ||||| |||||||||||||| ||| |
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|
| T |
34016795 |
ctctaattcagctgggggaacctgaaaaaaagcaaggaaatgtaaat--atagaaaatgatatcttcaaaaatatttgtcc-cttcacaatgcatcgcct |
34016891 |
T |
|
| Q |
101 |
gataagctttgtatttgatcaattccttcagtctatc |
137 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||| |
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|
| T |
34016892 |
gataagctttgtattagatcaattcctttagtctatc |
34016928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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