View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0782_high_13 (Length: 376)
Name: NF0782_high_13
Description: NF0782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0782_high_13 |
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| [»] chr1 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 53 - 376
Target Start/End: Complemental strand, 36199899 - 36199575
Alignment:
| Q |
53 |
ctgctcttatgttaactctcttgtgcttcagcctatacctattagataatcgaaaatccgaaagatgaagaaacaatacaagatctaaaatgcacnnnnn |
152 |
Q |
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| T |
36199899 |
ctgctcttatgttaactctcttgtgcttcagcctatacctattcaacaatcgaaaatccgaaagatgaagaaacaatacaagatctaaaatgcacaaaaa |
36199800 |
T |
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| Q |
153 |
nn-catgataaacatttacaaacaaaggaggagaaataatttgaacttggaacttactgtctgagtgtaccagaggtgaacatttcagtgacaaagttaa |
251 |
Q |
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| T |
36199799 |
aaacatgataaacatttacaaacaaaggaggagaaataatttgaacttggaacttactgtctgagtgtaccagaggtgaacatttcagtgacaaagttaa |
36199700 |
T |
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| Q |
252 |
tattcctattagcagtatccacccaagaggtgtaaaatttcataatgtttttgtgtttcaatgtcttcaagagatgaatttcacagtaaagcctttcaag |
351 |
Q |
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| T |
36199699 |
tattcctattagcagtatccacccaagaggtgtaaaatttcataatgtttttgtgtttcaatgttttcaagagatgaatttcacagtaaagcctttcaag |
36199600 |
T |
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| Q |
352 |
gtcttcaggactttgtaagaaatca |
376 |
Q |
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| T |
36199599 |
atcttcaggactttgtaagaaatca |
36199575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 376
Target Start/End: Original strand, 47006183 - 47006357
Alignment:
| Q |
202 |
aacttactgtctgagtgtaccagaggtgaacatttcagtgacaaagttaatattcctattagcagtatccacccaagaggtgtaaaatttcataatgttt |
301 |
Q |
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| T |
47006183 |
aactaactgtctaagagtcccagatgtgaacatctcagtgacaaagttaatgtttctgttggtactatcaacccatgaagtgtagaacttcatgatattc |
47006282 |
T |
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| Q |
302 |
ttgtgtttcaatgtcttcaag-agatgaatttcacagtaaagcctttcaaggtcttcaggactttgtaagaaatca |
376 |
Q |
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| T |
47006283 |
ttgtgcttcaatgtc-tcaagaagatgaatttcacagtataacctctcaaggtcttcagaattttgcaaaaaatca |
47006357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 201 - 376
Target Start/End: Original strand, 47354638 - 47354813
Alignment:
| Q |
201 |
gaacttactgtctgagtgtaccagaggtgaacatttcagtgacaaagttaatattcctattagcagtatccacccaagaggtgtaaaatttcataatgtt |
300 |
Q |
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| T |
47354638 |
gaactcactgtctaagagtaccagaagtaaacaattcagtgacaaagttgatattcctatttgcagtatcaacccaagaagtataaaatttcataatgtt |
47354737 |
T |
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| Q |
301 |
tttgtgtttcaatgtcttcaagagatgaatttcacagtaaagcctttcaaggtcttcaggactttgtaagaaatca |
376 |
Q |
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| T |
47354738 |
tttgtgcttcaacgtcttgaggagatgaatttcgcagtaaagcctctcgagatcttcggggttttgtaggaaatca |
47354813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 51112922 - 51112971
Alignment:
| Q |
7 |
ccaaggccttcggtgattttatctttggccaactcagtccatgtctctgc |
56 |
Q |
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| T |
51112922 |
ccaaggccttcggtgattttctctttggcccactcagtccatgtctctgc |
51112971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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